View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19058_high_10 (Length: 529)

Name: NF19058_high_10
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19058_high_10
NF19058_high_10
[»] chr2 (6 HSPs)
chr2 (17-324)||(21490771-21491068)
chr2 (388-514)||(21490559-21490685)
chr2 (353-387)||(21490708-21490742)
chr2 (263-301)||(15901903-15901941)
chr2 (260-324)||(3091853-3091917)
chr2 (260-324)||(14140234-14140298)
[»] chr7 (5 HSPs)
chr7 (260-324)||(32933659-32933723)
chr7 (260-324)||(37351885-37351949)
chr7 (260-302)||(10591286-10591328)
chr7 (260-302)||(47193061-47193103)
chr7 (257-309)||(38861099-38861151)
[»] chr6 (3 HSPs)
chr6 (260-298)||(30714811-30714849)
chr6 (357-387)||(12441543-12441573)
chr6 (260-324)||(2340510-2340574)
[»] chr5 (9 HSPs)
chr5 (257-306)||(35634855-35634904)
chr5 (357-387)||(125097-125127)
chr5 (357-387)||(29227722-29227752)
chr5 (258-324)||(39595386-39595452)
chr5 (354-387)||(14508190-14508223)
chr5 (260-324)||(14323863-14323927)
chr5 (260-324)||(24431513-24431577)
chr5 (258-298)||(33243634-33243674)
chr5 (260-324)||(34381124-34381188)
[»] chr8 (6 HSPs)
chr8 (260-302)||(5502496-5502538)
chr8 (260-302)||(11223754-11223796)
chr8 (256-309)||(10731548-10731601)
chr8 (258-291)||(15200419-15200452)
chr8 (359-387)||(6004949-6004977)
chr8 (257-308)||(18231644-18231696)
[»] chr4 (2 HSPs)
chr4 (357-387)||(51039152-51039182)
chr4 (260-324)||(30037311-30037375)
[»] chr1 (3 HSPs)
chr1 (358-387)||(10384216-10384245)
chr1 (257-306)||(29359642-29359691)
chr1 (260-324)||(45740439-45740503)
[»] chr3 (1 HSPs)
chr3 (260-324)||(51672975-51673039)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-110; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 21491068 - 21490771
Alignment:
Q  17 cacaaaggagagtatctatttttaaaaatgggaggtttatgtaatgttattgaatttgattggtttgtgttggatcaaaattttgtaatttttctatcaa 116  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  21491068 cacaaaggagagtatatatttttaaaaatgggtggtttatgtaatgttattgaatttgattggtttgtgttggatcaaa-ttttgtaatttttccatcaa 21490970  T
Q  117 atccaactcaattatcgaagtataaaagagagatagtttcccagtccgtccctccctatatgcttaaaagtatcaaaatgttttagggacaacttgttcn 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||     
T  21490969 atccaactcaattatcgaagtataaaagagagatagtttcccagtccgtccctccctatatgcttaaaagtatcaaaatg-tttagggaaaacttgttct 21490871  T
Q  217 nnnnnnnnnnnnnncttttcagataaaactatattatcgtaaatgatatttgaacaatcatttgagataacttttgttacaacttcctctttttctattt 316  Q
                   | ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  21490870 ttttattt-------tcttcagataaaactatattatcgtaaatgatatttgaacaattatttgagataatttttgttacaacttcctc-ttttctattt 21490779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 388 - 514
Target Start/End: Complemental strand, 21490685 - 21490559
Alignment:
Q  388 acgaaaaatgagaaatatattttgtgtgtggtacataacctaatgaaacatggctcatactatttgccccattcatagatataactcaaaggtgtattat 487  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21490685 acgaaaaatgagaaagacattttgtgtgtggtacataacctaatgaaacatggctcatactatttgccccattcatagatataactcaaaggtgtattat 21490586  T
Q  488 cactttggaggtttctctataggccct 514  Q
    |||||||||||||||| ||||||||||    
T  21490585 cactttggaggtttctttataggccct 21490559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 387
Target Start/End: Complemental strand, 21490742 - 21490708
Alignment:
Q  353 tgatagttgtcacaaagtagttgtacaaatatcat 387  Q
    |||||||||||||||||||||||||||||||||||    
T  21490742 tgatagttgtcacaaagtagttgtacaaatatcat 21490708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 301
Target Start/End: Original strand, 15901903 - 15901941
Alignment:
Q  263 tatttgaacaatcatttgagataacttttgttacaactt 301  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  15901903 tatttgaacaatcatatgagataacttttgtgacaactt 15901941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 324
Target Start/End: Complemental strand, 3091917 - 3091853
Alignment:
Q  260 tgatatttgaacaatcatttgagataacttttgttacaacttcctctttttctatttttattggt 324  Q
    ||||||||||||||| |||||| | ||||||||| |||||||| | ||| ||| |||| ||||||    
T  3091917 tgatatttgaacaattatttgatacaacttttgtgacaacttcttttttctctcttttcattggt 3091853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 14140234 - 14140298
Alignment:
Q  260 tgatatttgaacaatcatttgagataacttttgttacaacttcctctttttctatttttattggt 324  Q
    |||||||||||||||||||| | ||||||||||| |||| ||| | ||| ||| |||| ||||||    
T  14140234 tgatatttgaacaatcatttaaaataacttttgtgacaatttcttttttctctcttttcattggt 14140298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 324
Target Start/End: Complemental strand, 32933723 - 32933659
Alignment:
Q  260 tgatatttgaacaatcatttgagataacttttgttacaacttcctctttttctatttttattggt 324  Q
    ||||||||||||||| |||||| | ||||||||| |||| ||| | |||||||||||||||||||    
T  32933723 tgatatttgaacaattatttgatacaacttttgtgacaatttcttttttttctatttttattggt 32933659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 37351885 - 37351949
Alignment:
Q  260 tgatatttgaacaatcatttgagataacttttgttacaacttcctctttttctatttttattggt 324  Q
    |||||||||||||||||||||| ||||||||||| |||| ||| | ||| ||| |||||||||||    
T  37351885 tgatatttgaacaatcatttgatataacttttgtgacaatttcttttttctctctttttattggt 37351949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 302
Target Start/End: Complemental strand, 10591328 - 10591286
Alignment:
Q  260 tgatatttgaacaatcatttgagataacttttgttacaacttc 302  Q
    |||||||||||||| ||||||||| ||||||||| ||||||||    
T  10591328 tgatatttgaacaaccatttgagacaacttttgtgacaacttc 10591286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 302
Target Start/End: Complemental strand, 47193103 - 47193061
Alignment:
Q  260 tgatatttgaacaatcatttgagataacttttgttacaacttc 302  Q
    |||||||||||||| ||||| |||||||||||| |||||||||    
T  47193103 tgatatttgaacaaccattttagataacttttggtacaacttc 47193061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 309
Target Start/End: Original strand, 38861099 - 38861151
Alignment:
Q  257 aaatgatatttgaacaatcatttgagataacttttgttacaacttcctctttt 309  Q
    |||||||||||||||||||||||   | ||||||||| ||||||| |||||||    
T  38861099 aaatgatatttgaacaatcattttttacaacttttgtgacaactttctctttt 38861151  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 298
Target Start/End: Complemental strand, 30714849 - 30714811
Alignment:
Q  260 tgatatttgaacaatcatttgagataacttttgttacaa 298  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  30714849 tgatatttgaacaatcatttgagataacttttgtgacaa 30714811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 387
Target Start/End: Complemental strand, 12441573 - 12441543
Alignment:
Q  357 agttgtcacaaagtagttgtacaaatatcat 387  Q
    |||||||||||||||||||||||||||||||    
T  12441573 agttgtcacaaagtagttgtacaaatatcat 12441543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 324
Target Start/End: Complemental strand, 2340574 - 2340510
Alignment:
Q  260 tgatatttgaacaatcatttgagataacttttgttacaacttcctctttttctatttttattggt 324  Q
    |||||||| ||||||||||||||| ||||||||| | || || || ||| ||| |||||||||||    
T  2340574 tgatatttaaacaatcatttgagacaacttttgtaataattttctttttctctctttttattggt 2340510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 35634904 - 35634855
Alignment:
Q  257 aaatgatatttgaacaatcatttgagataacttttgttacaacttcctct 306  Q
    |||||||||||||||||||||||  || ||||||||||||||||| ||||    
T  35634904 aaatgatatttgaacaatcatttttgacaacttttgttacaactttctct 35634855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 387
Target Start/End: Complemental strand, 125127 - 125097
Alignment:
Q  357 agttgtcacaaagtagttgtacaaatatcat 387  Q
    |||||||||||||||||||||||||||||||    
T  125127 agttgtcacaaagtagttgtacaaatatcat 125097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 387
Target Start/End: Complemental strand, 29227752 - 29227722
Alignment:
Q  357 agttgtcacaaagtagttgtacaaatatcat 387  Q
    |||||||||||||||||||||||||||||||    
T  29227752 agttgtcacaaagtagttgtacaaatatcat 29227722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 39595452 - 39595386
Alignment:
Q  258 aatgatatttgaacaatcatttgagataacttttgttacaacttcctctttttctatttttattggt 324  Q
    |||||||||||||||| ||||||| | ||||||||| |||||||| | ||| ||| |||| ||||||    
T  39595452 aatgatatttgaacaaccatttgatacaacttttgtgacaacttcttttttctctcttttcattggt 39595386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 387
Target Start/End: Original strand, 14508190 - 14508223
Alignment:
Q  354 gatagttgtcacaaagtagttgtacaaatatcat 387  Q
    ||||||||||||||| ||||||||||||||||||    
T  14508190 gatagttgtcacaaaatagttgtacaaatatcat 14508223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 14323863 - 14323927
Alignment:
Q  260 tgatatttgaacaatcatttgagataacttttgttacaacttcctctttttctatttttattggt 324  Q
    |||||||| ||||| | |||||||||||||||| ||||||||| | ||| ||  |||||||||||    
T  14323863 tgatatttaaacaaccttttgagataacttttggtacaacttcttttttctcactttttattggt 14323927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 24431513 - 24431577
Alignment:
Q  260 tgatatttgaacaatcatttgagataacttttgttacaacttcctctttttctatttttattggt 324  Q
    |||||||||||||| ||||||||| |||| |||| |||||||| | ||| ||| |||| ||||||    
T  24431513 tgatatttgaacaaccatttgagacaactattgtgacaacttcatttttctctcttttcattggt 24431577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 33243634 - 33243674
Alignment:
Q  258 aatgatatttgaacaatcatttgagataacttttgttacaa 298  Q
    |||||||||||||||| ||||| ||||||||||||| ||||    
T  33243634 aatgatatttgaacaaccatttcagataacttttgtgacaa 33243674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 324
Target Start/End: Complemental strand, 34381188 - 34381124
Alignment:
Q  260 tgatatttgaacaatcatttgagataacttttgttacaacttcctctttttctatttttattggt 324  Q
    |||||||||||||| ||||||| |||| |||||| |||||||| | ||| ||| |||| ||||||    
T  34381188 tgatatttgaacaaccatttgatataatttttgtgacaacttcgtttttctctcttttcattggt 34381124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 302
Target Start/End: Complemental strand, 5502538 - 5502496
Alignment:
Q  260 tgatatttgaacaatcatttgagataacttttgttacaacttc 302  Q
    |||||||||||||||||||||| |||| |||||| ||||||||    
T  5502538 tgatatttgaacaatcatttgatataatttttgtgacaacttc 5502496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 11223754 - 11223796
Alignment:
Q  260 tgatatttgaacaatcatttgagataacttttgttacaacttc 302  Q
    |||||||||||||||| ||||||| |||||||| |||||||||    
T  11223754 tgatatttgaacaatcttttgagacaacttttggtacaacttc 11223796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 10731548 - 10731601
Alignment:
Q  256 taaatgatatttgaacaatcatttgagataacttttgttacaacttcctctttt 309  Q
    |||||||||| |||||||||||||  || ||||||||| ||||||| |||||||    
T  10731548 taaatgatatatgaacaatcatttttgacaacttttgtaacaactttctctttt 10731601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 15200419 - 15200452
Alignment:
Q  258 aatgatatttgaacaatcatttgagataactttt 291  Q
    |||||||||||||||| |||||||||||||||||    
T  15200419 aatgatatttgaacaaccatttgagataactttt 15200452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 387
Target Start/End: Complemental strand, 6004977 - 6004949
Alignment:
Q  359 ttgtcacaaagtagttgtacaaatatcat 387  Q
    |||||||||||||||||||||||||||||    
T  6004977 ttgtcacaaagtagttgtacaaatatcat 6004949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 308
Target Start/End: Complemental strand, 18231696 - 18231644
Alignment:
Q  257 aaatgatatttgaacaatcatttga-gataacttttgttacaacttcctcttt 308  Q
    |||||||||||||| |||||||||| |||| ||||||| ||||||| ||||||    
T  18231696 aaatgatatttgaataatcatttgatgatagcttttgtgacaactttctcttt 18231644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 387
Target Start/End: Original strand, 51039152 - 51039182
Alignment:
Q  357 agttgtcacaaagtagttgtacaaatatcat 387  Q
    |||||||||||||||||||||||||||||||    
T  51039152 agttgtcacaaagtagttgtacaaatatcat 51039182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 30037311 - 30037375
Alignment:
Q  260 tgatatttgaacaatcatttgagataacttttgttacaacttcctctttttctatttttattggt 324  Q
    ||||||||||| |||||||| | |||| |||||| |||| || || ||||||| |||||||||||    
T  30037311 tgatatttgaaaaatcatttaaaataatttttgtgacaattttctttttttctttttttattggt 30037375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 387
Target Start/End: Complemental strand, 10384245 - 10384216
Alignment:
Q  358 gttgtcacaaagtagttgtacaaatatcat 387  Q
    ||||||||||||||||||||||||||||||    
T  10384245 gttgtcacaaagtagttgtacaaatatcat 10384216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 29359642 - 29359691
Alignment:
Q  257 aaatgatatttgaacaatcatttgagataacttttgttacaacttcctct 306  Q
    |||||||||||||||||||||||   ||||||||||| ||||||| ||||    
T  29359642 aaatgatatttgaacaatcattttttataacttttgtaacaactttctct 29359691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 45740439 - 45740503
Alignment:
Q  260 tgatatttgaacaatcatttgagataacttttgttacaacttcctctttttctatttttattggt 324  Q
    |||||||||||||||||||||| |||| |||| | |||||||| | ||| || ||||| ||||||    
T  45740439 tgatatttgaacaatcatttgaaataatttttatgacaacttcttttttctcaattttcattggt 45740503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 324
Target Start/End: Complemental strand, 51673039 - 51672975
Alignment:
Q  260 tgatatttgaacaatcatttgagataacttttgttacaacttcctctttttctatttttattggt 324  Q
    |||||||||||||| ||||| ||| |||||||| ||||||||| | ||||||  |||| ||||||    
T  51673039 tgatatttgaacaaccattttagacaacttttggtacaacttcttttttttcagttttcattggt 51672975  T

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