View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_high_100 (Length: 221)
Name: NF19058_high_100
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_high_100 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 21533363 - 21533571
Alignment:
| Q |
1 |
aagcacatgaaagggtaaattttctgatttttgagtttggctaggaactcaaactccttaatctttagcttaaaccggttaaattatccaactttccaga |
100 |
Q |
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| T |
21533363 |
aagcacatgaaagggtaaattttctgatttttgagtttggctaggaactcaaactccttaatctttagcttaaaccggttgaattatccaacttt-caga |
21533461 |
T |
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| Q |
101 |
taattgctttaatgataagttgtattagaaatgcctctaaaaattgcagtagaaaagggtaa-nnnnnnnnnnaagcaaattaattgaagtgcaaatgtg |
199 |
Q |
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| T |
21533462 |
taattgctttaatgataagttgtattagaagtgcctctaaaaattgcagtagaagagggtaatttttttttttaagcaaattaattgaagtgcaaatgtg |
21533561 |
T |
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| Q |
200 |
ttattctata |
209 |
Q |
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|||||||||| |
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| T |
21533562 |
ttattctata |
21533571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 21528808 - 21528940
Alignment:
| Q |
16 |
taaattttc-tgatttttgagtttggctaggaactcaaactccttaatctttagcttaaaccggttaaattatccaactttccagataattgctttaatg |
114 |
Q |
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| T |
21528808 |
taaattttcctgattttcgagtttggctaggaactcaaaatccttaatatttagcttaaa-------------ccaacttt-cagttaattgttctaatg |
21528893 |
T |
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| Q |
115 |
ataagttgtattagaaatgcctctaaaa-attgcagtagaaaagggt |
160 |
Q |
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| T |
21528894 |
ataagttgtattagaagtgcctctaaaacattgtagtagaagagggt |
21528940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 21528980 - 21529013
Alignment:
| Q |
176 |
caaattaattgaagtgcaaatgtgttattctata |
209 |
Q |
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| T |
21528980 |
caaattaattgaagtgcaaatgtgttattgtata |
21529013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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