View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19058_high_15 (Length: 484)
Name: NF19058_high_15
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 17 - 370
Target Start/End: Original strand, 32970331 - 32970685
Alignment:
| Q |
17 |
atatacaaatacaaggcttacacaaaacttcaatcaagaccgatgatcgaataaaagagaactacacataattgataacccaaaaagggcaaattaaaac |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
32970331 |
atatacaaatacaaggcttacacaaaacttcaatcaagatcaatgatcgaataaaagagaactacacataattaataacccaaaaagggcaaatcaaaac |
32970430 |
T |
|
| Q |
117 |
aataaacaggcaaccacaataaacatatgcaaaataatcannnnnnnnaggaacaaaataatcaaccattcacgctacacaaacatgtagaattaaaata |
216 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32970431 |
aataaacaggcaaccacaagaaacatatgcaaaataatcattttttttaggaacaaaataatcaaccattcacgctacacaaacatgtagaattaaacta |
32970530 |
T |
|
| Q |
217 |
aattcgtcgacaaaataactcggtcttcatcacccatccaaccacatctcaccaatgcctttatcccaagcaaacacgagaaactctcaaagatc-aaca |
315 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
32970531 |
aattcgtcgacaaaataacccggtcttcatcacccaaccaaccacatctcacgaatgcctttatcccaagcaaacacgataaactctcaaagatcaaaca |
32970630 |
T |
|
| Q |
316 |
ttcaccggtcttcgacaaaaaccatattccgtaacgcatccaaatacttcagacc |
370 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32970631 |
ttcacaggtcttcgacaaaaaccttattccgtaacgcatccaaatacttcagacc |
32970685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 370
Target Start/End: Complemental strand, 3984899 - 3984540
Alignment:
| Q |
17 |
atatacaaatacaaggcttacacaaaacttcaatcaagaccgat----gatcgaataaaagagaactacacataattgataacccaaaaagggcaaatta |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3984899 |
atatacaaatacaaggcttacacaaaacttcaatcaagatcgatcgatgatcgaataaaagagaactacacataattgataacccaaaaagggcaaatca |
3984800 |
T |
|
| Q |
113 |
aaacaataaacaggcaaccacaataaacatatgcaaaataatcannnnnnnnagg-aacaaaataatcaaccattcacgctacacaaacatgtagaatta |
211 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3984799 |
aaacaataaacaggctaccacaagaaacatatgcaaaataatcattttttttagggaacaaaataatcaaccattcacgctacacaaacatgtagaatta |
3984700 |
T |
|
| Q |
212 |
aaataaattcgtcgacaaaataactcggtcttcatcacccatccaaccacatctcaccaatgcctttatcccaagcaaacacgagaaactctcaaagatc |
311 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
3984699 |
aactaaattcgtcgacaaaataacccggtcttcatcacccaaccaaccacatctcaccaatgcctttatcctaagctaacacgagaaactctcaaagatc |
3984600 |
T |
|
| Q |
312 |
-aacattcaccggtcttcgacaaaaaccatattccgtaacgcatccaaatacttcagacc |
370 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3984599 |
aaacattcacaggtcttcgacaaaaaccttattccgtaacgcatccaaatacttcagacc |
3984540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University