View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_high_17 (Length: 468)
Name: NF19058_high_17
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 10 - 459
Target Start/End: Complemental strand, 32916176 - 32915729
Alignment:
| Q |
10 |
gcaaaggtgtactggggagatccaagggagaaattgtgcaatgctgtggaagatcttcatctggactcattggttattggaagcaggggtttaggcacca |
109 |
Q |
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| T |
32916176 |
gcaaaggtgtactggggagatccaagggagaaattgtgcaatgctgtggaagatcttcatctggactcattggttattggaagcaggggtttaggtacca |
32916077 |
T |
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| Q |
110 |
ttaaaaggtactacaatttatcctccagtaaattaattttaagtcttttgaaaattttgtgtttaatttgattcaaagagattgtttaaacatttgannn |
209 |
Q |
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| T |
32916076 |
ttaaaaggtactattgtttatccttcagtaaattaattttaagctttttgaagattttgtgtttaatttgattcaaagagattgtttaaacatttgattt |
32915977 |
T |
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| Q |
210 |
nnnnnnct-ttctttcagtgtgttgttaggcagtgttagcaagcatgtggtgacaaatgcttcttgcccggttactgtagtcaagggaatgcaatcttcc |
308 |
Q |
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| T |
32915976 |
tttttcttcttctttcagtgtgttgttaggcagtgttagcaagcatgtggtaacaaatgcttcttgcccggttactgtagtcaagggaatgcaatcttcc |
32915877 |
T |
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| Q |
309 |
aagtctaggcattgatttgatatgattattattaatatttactttgggtttgtttacatatgaaaaaataaataaatcacttaaagtactgtaccctttg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32915876 |
aagtctaggcattgatttgatatgattattattaatatttactttgggtttgtttacatatg--aaaataaataaatcacttaaagtactgtaccctttg |
32915779 |
T |
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| Q |
409 |
aaatgctttggctagcttgaataattgtctttttggcattgtttgtgatga |
459 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |||||| |||| |
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| T |
32915778 |
aaatgctttggctagcttgaataattgtc-ttttggcatggtttgttatga |
32915729 |
T |
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