View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19058_high_18 (Length: 464)
Name: NF19058_high_18
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_high_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 7 - 236
Target Start/End: Original strand, 32346665 - 32346897
Alignment:
| Q |
7 |
gtgagatgaacaaaatactcaattataatggaggagggagtatataatatannnnnnncccccaaaatgtataatataaaaaatgaaattaaatcatatt |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32346665 |
gtgaaatgaacaaaatactcaattataatggaggagggagtatataatatatttttt-cccccaaaatgtataatataaaaaatgaaattaaatcatatt |
32346763 |
T |
|
| Q |
107 |
tgttactaatcattcaagttctcagctctata---gatgatagataatattgcatatatctacttttttcaatgtatatggctcgtacagt-acacggat |
202 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32346764 |
tgttactaatcattcaagtttttagctctatagatgatgatagataatattgcatatatctatttttttcaatgtatatggctcgtacagtaacacggat |
32346863 |
T |
|
| Q |
203 |
agacgatctaatttatccaatataccggtacatg |
236 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
32346864 |
agacgatctaatttatccaatataccagtacatg |
32346897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 301 - 363
Target Start/End: Original strand, 32346961 - 32347023
Alignment:
| Q |
301 |
atcaaaatagcctaagtatcaaagcaatgaagtagtataaattaaatgccaaatctctttgta |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32346961 |
atcaaaatagcctaagtatcaaagcaatgaagtagtataaattaaatgccaaatctctttgta |
32347023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 406 - 446
Target Start/End: Original strand, 32347068 - 32347108
Alignment:
| Q |
406 |
gtgagagagaatgcaattctaagtcataaattattgtggac |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32347068 |
gtgagagagaatgcaattctaagtcataaattattgtggac |
32347108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 44579755 - 44579796
Alignment:
| Q |
142 |
gatagataatattgcatatatctacttttttcaatgtatatg |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44579755 |
gatagataatattgcatatatctactttttaaaatgtatatg |
44579796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University