View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_high_2 (Length: 798)
Name: NF19058_high_2
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 474; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 256 - 788
Target Start/End: Complemental strand, 9503093 - 9502556
Alignment:
| Q |
256 |
tctcggcgtgactatatatatttttcatacgcatcagtcagaaatcgagcacatgatcaaagcatccaattatctatctagttgtatactgcctagaaat |
355 |
Q |
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|||||| |||||||||||| |||||||||| ||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
9503093 |
tctcggtgtgactatatatgtttttcatacacatcagtcagaaatcaagcacatgatgagagcatccaattatctatctagttgtatactgcctagaaat |
9502994 |
T |
|
| Q |
356 |
tagtactatcaaatatattaagaaaatcaaatatagtactac-----cttatgatcagaagacaactccacgacttcaccacctcgtcccaaaacggctc |
450 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9502993 |
tagtactatcaaatatattaagaaaatcaaatatagtactacagtaccttatgatcagaagacaactccacgacttcaccacctcgtcccaaaacggctc |
9502894 |
T |
|
| Q |
451 |
tagaatcaccacaattcgcaacaacaatctcctctttaacaacaaccgccacaacagccgtggatcccacggtcctaaccgcggcatcacccgccacctc |
550 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9502893 |
tagaatcaccacaattcgcaacaacaatctcctctttaacaacaaccgccacaacagccgtggatcccacggtcctaaccgtggcatcacccgccacctc |
9502794 |
T |
|
| Q |
551 |
cctatccattttaccaaaacacccttccatcaccctctcccaatcccattccctatcctcccaacacatctcgacctcctccgccacaatcctatacaac |
650 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
9502793 |
cctatccattttaccaaaacacccttccatcaccctctcccaatcccattccctatcctcccaaaacatctcaacctcctccgccacaatcctatacaac |
9502694 |
T |
|
| Q |
651 |
ctctctctacacgacaccgccacctgagcaccaccgtgaccatcataaacaccgaagaaatcacacttctctccatccttcatcgtaaaacctatcccca |
750 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9502693 |
ctctctctacacgacaccgccacctgagcaccaccgtgaccatcataaacaccgaagaaatcacacttctctccatccttcatcgtaaaacctatctcca |
9502594 |
T |
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| Q |
751 |
cactcaccgcatcctccatttccttcctacagcctatg |
788 |
Q |
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| T |
9502593 |
tactcaccgcatcctccatttccttcctacagcctatg |
9502556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 9503287 - 9503211
Alignment:
| Q |
17 |
acaaacaaggaaatcaatattacattcattcattatcatacaatagttttctttggaatgaaaaactttatctactt |
93 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9503287 |
acaaacaaggaaatcaatattaccttcattcattatcatacaatagttttctttggaatgaaaaaatttatctactt |
9503211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 9503142 - 9503093
Alignment:
| Q |
171 |
actctagaatctagatgcaacaatgtatagatattgcattttgctgcaat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9503142 |
actctagaatctagatgcaacaatgtatagatattgcaatttgctgcaat |
9503093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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