View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_high_21 (Length: 436)
Name: NF19058_high_21
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 4776222 - 4775796
Alignment:
| Q |
1 |
cgcagtatacttggtgccttacactacctttcaatcactcgcccagacatagcatttccagtgaataaactagcataacaaatgcaagctccgactgtga |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4776222 |
cgcagtatgcttggtgccttacactacctttcaatcactcgcccagacattgcatttccagtgaataaactagcataacaaatgcaagctcctactgtga |
4776123 |
T |
|
| Q |
101 |
cagatatgcaagccttgaagagagtattgcgctatctcaaatccaccatctccaatggactccatctcacaagatcttcaaatacaagcctcacaagctt |
200 |
Q |
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| T |
4776122 |
cagatatgcaagccttgaagagagtattgcgctatctcaaatccaccatctccaatggactccatctcacaagatcttcaaatacaaacctcacaagctt |
4776023 |
T |
|
| Q |
201 |
ttgtgatgcagattgggcaggagacacaattgacagga----aacaggtgcttatttaatttatattggccctaatattatctcttggtcatgcaagaag |
296 |
Q |
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| T |
4776022 |
ttgtgatgcagattaggcaggagacacaattgacaggaaatcaacaggtgcttatttaatttattttggccctaatattatctcttggtcatgcaagaag |
4775923 |
T |
|
| Q |
297 |
caaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttc |
396 |
Q |
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| T |
4775922 |
caaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttc |
4775823 |
T |
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| Q |
397 |
aaattccattaacggcaccaacaatat |
423 |
Q |
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| T |
4775822 |
aaattccattaactgcaccaacaatat |
4775796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 184 - 423
Target Start/End: Complemental strand, 43061400 - 43061157
Alignment:
| Q |
184 |
acaagcctcacaagcttttgtgatgcagattgggcaggagacacaattgacagga----aacaggtgcttatttaatttatattggccctaatattatct |
279 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||| |
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| T |
43061400 |
acaagcctcacaaacttttgtgatgcagattgggcaggagacacaattgacaggatatgaacaggtgcttatttcatttattttggccctaatattatct |
43061301 |
T |
|
| Q |
280 |
cttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagaattaatatgggttcaaaa |
379 |
Q |
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| T |
43061300 |
cttggtcatgcaagaagcagccaacagttgcaaaatcatcaactgaagctgaatatcggactatagcagccactactcaggaattaatatgggttcaaaa |
43061201 |
T |
|
| Q |
380 |
cttgttacaagaacttcaaattccattaacggcaccaacaatat |
423 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
43061200 |
cttgttacaagaacttcaaattccattaactgcaccaacgatat |
43061157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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