View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_high_24 (Length: 424)
Name: NF19058_high_24
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_high_24 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 3565757 - 3566148
Alignment:
| Q |
18 |
ctccgttgttttaaattccagaagaaggggatgatagtggtcagaggtgagccttattaaagttgaacgagatgttgtgctacatgcatctaaccaatct |
117 |
Q |
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| T |
3565757 |
ctccgttgttttaaattccagaagaaggggatgatagtgctcagaggtgagccttattaaagttgaacgagatgttgtgctacatgcatctaaccaatct |
3565856 |
T |
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| Q |
118 |
tgattgcaaatagacctgtccagtctcctttgagtgaatcttcgtccctctcttccatttttccatgtaaaaagcgcgccctttgttggtaaatgtaata |
217 |
Q |
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| T |
3565857 |
tgattgcaaatagacctgtccagtctcctttgagtgaatcttcatccctatcttccatttttccatgtaaaaagcgcgccctttgttggtaaatgtaata |
3565956 |
T |
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| Q |
218 |
aatcataagtatctgtccatgcttgaaaatcttgcatgggagttctagaaggagagcagttgccctgatgttcataagctcccaatattgtgttaaaatc |
317 |
Q |
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| T |
3565957 |
aatcataagtatctgtccatgcttgaaaatcttgcatgggagttctagaaggagagcagtttccctgatgttcataagctcccaatattgtgttaaaatc |
3566056 |
T |
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| Q |
318 |
accagtaaagttccaagggaggctgaactgacttaacaaatcaccaagagtattccacaatttccttatcttcaagtaacaagttgatgcat |
409 |
Q |
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| T |
3566057 |
accagtaaagttccaagggaggctgaactgacttaacaaatcaccaagagtattccacaatttccttctcttcaagtaacaagttgatgcat |
3566148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 14 - 409
Target Start/End: Original strand, 139834 - 140226
Alignment:
| Q |
14 |
gaacctccgttgttttaaattccagaagaaggggatgatagtggtcagaggtgagccttattaaagttgaacgagatgttgtgctacatgcatctaacca |
113 |
Q |
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| T |
139834 |
gaacctctgttgttttaaattccagaagaaggggat---agtggtcagaggtgagccttattaaagttgaacaagatgttgtgctacatgcatctaacca |
139930 |
T |
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| Q |
114 |
atcttgattgcaaatagacctgtccagtctcctttgagtgaatcttcgtccctctcttccatttttccatgtaaaaagcgcgccctttgttggtaaatgt |
213 |
Q |
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| T |
139931 |
atcttgattgcaaatagacctgtccagtctcctttgagtgaatcttcttccctttcttccatttttccatgtaaaaagcgcgccctttgttggtaaatgt |
140030 |
T |
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| Q |
214 |
aataaatcataagtatctgtccatgcttgaaaatcttgcatgggagttctagaaggagagcagttgccctgatgttcataagctcccaatattgtgttaa |
313 |
Q |
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| T |
140031 |
aataaatcataagtatctgtccatgcttgaaaatcttgcatgggagttctagaaggagagcagtttccctgatgttcataagctcccaatattgtgttaa |
140130 |
T |
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| Q |
314 |
aatcaccagtaaagttccaagggaggctgaactgacttaacaaatcaccaagagtattccacaatttccttatcttcaagtaacaagttgatgcat |
409 |
Q |
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| T |
140131 |
aatcaccaataaagttccaagggaggctgaactgacttaacaaattaccaagagtattccacaatttccttctcttcaagtaacaagttgatgcat |
140226 |
T |
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