View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_high_35 (Length: 360)
Name: NF19058_high_35
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 41247585 - 41247251
Alignment:
| Q |
18 |
gtctctaaatttcacatgatgccaaaacaaacaactctgaatttaattactatattaggcccaaaatgtttcgtgctgtcactgtttttagtttaatatt |
117 |
Q |
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| T |
41247585 |
gtctctaaatttcacatgatgccaaaacaaacaactctgaatttaattactatattaggcccaaaatgtttcgtgctgtcactgtttttagtttaatatt |
41247486 |
T |
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| Q |
118 |
tggtagtatatattgaatagtgtgatgagtttaacagcacattcatcttattgtaggacatgctatttaaaaacttcggcgggttcttaggttgtttcaa |
217 |
Q |
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| T |
41247485 |
tggtagtatatattgaatagtgtgatgagtttaacagcacattcatcttattgtaggacatgctatttaaaaacttcggcgggttcttaggttgtttcaa |
41247386 |
T |
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| Q |
218 |
atcggctactttttaaacttttttcatatattctcataacatgcatatgaaatcaagtggtgtggacaattcatatatatttttatctgcc-ttaattgt |
316 |
Q |
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| T |
41247385 |
atcggctactttttaaacttttttcgtatattctcataacatgcatatgaaatcaagtggtgtggacaattcatatatatttttatctgcctttaattgt |
41247286 |
T |
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| Q |
317 |
tttgtaatatactacatttattattccattcatctca |
353 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
41247285 |
tttgta--atactacatttattattccattcatctca |
41247251 |
T |
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