View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19058_high_36 (Length: 358)
Name: NF19058_high_36
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_high_36 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 341
Target Start/End: Complemental strand, 34993826 - 34993498
Alignment:
| Q |
15 |
tataaatgtaaagaataatagagatcttccaaatttat--tatgcaacccaagtcagtaagtcatagaaattaatggagaaaaatctcaataattgcaaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34993826 |
tataaatgttaagaataatagagatcttccaaatttatattatgcaacccaagtcagtaagtcatagaaattaatggagaaaaatctcaataattgcaaa |
34993727 |
T |
|
| Q |
113 |
gcatttattcatggaatcaaacactatcataaaatcacttgatgatatttaattctttgttttctatatataactataataaaacctattatgaacgtaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
34993726 |
gcatttattcatggaatcaaacactatcataaaatcacttgatgatatttaattctttgttttctatatataactataataacacctattatgaatgtaa |
34993627 |
T |
|
| Q |
213 |
ttcaccacaacaaatacattatcaattactttattaacatagtagtacttaaaggatatttaatagcatattattgaactaaccacatgcattttctcat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34993626 |
ttcaccacaacaaatacattatcaattactttattaacatagtagtacttaaaggatatttaatagcatattattgaactaaccacatgcattttctcat |
34993527 |
T |
|
| Q |
313 |
tatagcttccatctactccatctgtaaag |
341 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
34993526 |
tatagcttccatctactccatctgtaaag |
34993498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 34985594 - 34985527
Alignment:
| Q |
260 |
cttaaaggatatttaatagcatattattgaactaaccacatgcattttctcattatagcttccatcta |
327 |
Q |
| |
|
||||||||| | ||||||||||||||| ||||| |||||||||||||| |||| ||||||||| |||| |
|
|
| T |
34985594 |
cttaaaggaaaattaatagcatattatagaacttaccacatgcattttttcatcatagcttccttcta |
34985527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 177
Target Start/End: Complemental strand, 34985652 - 34985617
Alignment:
| Q |
142 |
taaaatcacttgatgatatttaattctttgttttct |
177 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34985652 |
taaaatcacttgatcatatttaattctttgttttct |
34985617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University