View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_high_42 (Length: 337)
Name: NF19058_high_42
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 4410929 - 4410601
Alignment:
| Q |
1 |
cggaatagtttatctcatcaagattttcaaatgaaaatgttgcaatttgaacaagtatttcctgaattacagcaaggtatcttgatcctaatattgcagg |
100 |
Q |
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| T |
4410929 |
cggaatagtttatctcatcaagattttcaaatgaaaatgttgcaatttgaacaagtatttcctgaattacagcaaggtatcttgatcctaatattgcggg |
4410830 |
T |
|
| Q |
101 |
cgaaaacttgacatgtttatcattccctaaactcatagaaagttccatactactacatgaggcttgttccaaacctgatcttgttccattcatgctatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4410829 |
cgaaaacttgacatgtttatcattccctaaactcatagaaagttccatactactacatgaggcttgttccaaacctgatcttgttccattcatgctatga |
4410730 |
T |
|
| Q |
201 |
gttaagtctgaacaactaatctctgagcattgacctgaagttggagatgttgcaagacttagtgaaagctcattgctacaattcgaggaactataagcga |
300 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4410729 |
gttaagtcagaacaactaatctctgagcattgaactgaagttggagatgttgcaagacttagtgaaagctcattgctacaattcgaggaactataagcga |
4410630 |
T |
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| Q |
301 |
gattcgttaagttagcaacatttgatgat |
329 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
4410629 |
gattcgttaagttagcaacatttgatgat |
4410601 |
T |
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