View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19058_high_43 (Length: 327)
Name: NF19058_high_43
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_high_43 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 150 - 309
Target Start/End: Original strand, 44608104 - 44608263
Alignment:
| Q |
150 |
aaagagtaagagaatgcaatgaacgaatttttctaagatcctctctaaaagtaaaaccatctccaattgaaaacttttgcctaaaaacaaaaatttgaag |
249 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44608104 |
aaagagtaagagaatgcgatatacgaatttttctaagatcctctctaaaagtaaaaccatctccaattgaaaacttttgcctaaaaacaaaaatttgaag |
44608203 |
T |
|
| Q |
250 |
atttttgcctagttagctactttcattggaaaataaataagatgtaaggctttgtataag |
309 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44608204 |
atttttgcctaattagctactttcattggaaaataaataagatgtaaggctttgtataag |
44608263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 22 - 156
Target Start/End: Original strand, 44607945 - 44608074
Alignment:
| Q |
22 |
ttatcctaatgcatgtgtataaacttgtgttgttttagggataattcataatnnnnnnnnnnnnnnnnnnttgctttggggataagaacactgcggctgt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||| |
|
|
| T |
44607945 |
ttatcctaatgcatgtgtataaacttgtgttgttttagggataattcattaaaaaaaaataaaaa------tgctttggggataagaacactgcggttgt |
44608038 |
T |
|
| Q |
122 |
a-tagtatagctggggagtggtattagtgaaagagt |
156 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44608039 |
agtagtatagctggggagtggtattagtgaaagagt |
44608074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University