View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19058_high_44 (Length: 321)
Name: NF19058_high_44
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_high_44 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 26121019 - 26121319
Alignment:
| Q |
1 |
aaaaatagatatcccacaattctgaaagtctgaaacttaatatatgactatcaaattttgaaattttgagtcaactaaaatcattaagatcaaacacagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26121019 |
aaaaatagatatcccacaattctgaaagtctgaaacttaatatatgaccatcaaattctgaaattttgagtcaactaaaatcagtaagatcaaacacagt |
26121118 |
T |
|
| Q |
101 |
atcacaatgaccacaaaacaaaaacagtaaagtcaaaagatataaattaaatttcgagtcaacataaatcatgcatgaccttaaaatttaagagaagacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26121119 |
atcacaatgaccacaaaacaaaaacagtaaagtcaaaagatataaa-----tttcgagtcaacataaatcatgcaagaccttaaaatttaagagaagacc |
26121213 |
T |
|
| Q |
201 |
caaactttaaaaatgaaagatataatctttgatgaaaatgaaacctgagtcttgggtccagcaaaagggaggagacgaattgaggtaatagattgagaaa |
300 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26121214 |
caaatttaaaaaatgaaagatataatctttgatgaaaatgaaacctgagtcttgggtccagcaaaagggaggagacgaattgaggtaatagattgagaaa |
26121313 |
T |
|
| Q |
301 |
caaaga |
306 |
Q |
| |
|
|||||| |
|
|
| T |
26121314 |
caaaga |
26121319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 98 - 306
Target Start/End: Original strand, 26128547 - 26128746
Alignment:
| Q |
98 |
agtatcacaatgaccacaaaacaaaaacagtaaagtcaaaagatataaattaaatttcgagtcaacataaatcatgcatgaccttaaaatttaagagaag |
197 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||| ||||||||||||||| | | | |
|
|
| T |
26128547 |
agtatcacaaagaccacaaaacaaaaacagtaaagtcaaaagatataaatt-----tggagtcaacaaaaatcatgcaagaccttaaaatttaaaa-atg |
26128640 |
T |
|
| Q |
198 |
acccaaactttaaaaatgaaagata--taatctttgatgaaaatgaaacctgagtcttgggtccagcaaaagggaggagacgaattgaggtaatagattg |
295 |
Q |
| |
|
| ||| || | |||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
26128641 |
aaagaaa-----aacacgaaagataaataatctttgatgaaaaagaaacctgggtcttgggtccagcaaaagggaagagacgaattgaggtaatggattg |
26128735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 26128426 - 26128522
Alignment:
| Q |
16 |
acaattctgaaagtctgaaacttaatatatgactatcaaattttgaaattttgagtcaactaaaatcattaagatcaaacacagtatcacaatgacc |
112 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| | |||||||||| |
|
|
| T |
26128426 |
acaaatctgaaagtctgaagcttattatatgactatcaaattctgaaattttgagtcaactaaaatcagtaagatcaaacacaattccacaatgacc |
26128522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 223 - 306
Target Start/End: Original strand, 26111709 - 26111792
Alignment:
| Q |
223 |
taatctttgatgaaaatgaaacctgagtcttgggtccagcaaaagggaggagacgaattgaggtaatagattgagaaacaaaga |
306 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||| ||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26111709 |
taatctttgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgaattgaggtaatagattgagaaacaaaga |
26111792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 230 - 306
Target Start/End: Original strand, 26085379 - 26085455
Alignment:
| Q |
230 |
tgatgaaaatgaaacctgagtcttgggtccagcaaaagggaggagacgaattgaggtaatagattgagaaacaaaga |
306 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||| ||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26085379 |
tgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgaattgaggtaatagattgagaaacaaaga |
26085455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 223 - 306
Target Start/End: Original strand, 26056135 - 26056218
Alignment:
| Q |
223 |
taatctttgatgaaaatgaaacctgagtcttgggtccagcaaaagggaggagacgaattgaggtaatagattgagaaacaaaga |
306 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||| ||| ||| ||||| ||||||||||||| ||||||||||||| |
|
|
| T |
26056135 |
taatctttgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgatttgaggtaatagactgagaaacaaaga |
26056218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 223 - 306
Target Start/End: Original strand, 26067797 - 26067880
Alignment:
| Q |
223 |
taatctttgatgaaaatgaaacctgagtcttgggtccagcaaaagggaggagacgaattgaggtaatagattgagaaacaaaga |
306 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||| ||| ||| ||||| ||||||||||||| ||||||||||||| |
|
|
| T |
26067797 |
taatctttgatgaaaatgaaacctgggtcttgggtacagcaacaggtaggtgacgatttgaggtaatagactgagaaacaaaga |
26067880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 26037964 - 26038046
Alignment:
| Q |
10 |
tatcccacaattctgaaagtctgaaacttaatat--atgactatcaaattttgaaattttgagtcaactaaaatcattaagat |
90 |
Q |
| |
|
|||||||||||||| ||| || |||||||||||| |||||||||||||| | ||||||| ||||||| |||||||||||||| |
|
|
| T |
26037964 |
tatcccacaattctaaaattcagaaacttaatatatatgactatcaaattctaaaattttcagtcaacgaaaatcattaagat |
26038046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 306
Target Start/End: Original strand, 26038150 - 26038313
Alignment:
| Q |
156 |
gagtcaacataaatcatgcatgaccttaaaatttaagagaagacccaaactttaaaaatgaaaga-------------tataatctttgatgaaaatgaa |
242 |
Q |
| |
|
|||||||| |||||||||| || ||||||||| |||| |||||||||| || |||||||||||| || |||||||||||||||| || |
|
|
| T |
26038150 |
gagtcaacgaaaatcatgcaagagcttaaaattcaagacaagacccaaaattcaaaaatgaaagaaaaacacaaaagctacaatctttgatgaaaataaa |
26038249 |
T |
|
| Q |
243 |
acctgagtcttgggtccagcaaaagggaggagacgaattgaggtaatagattgagaaacaaaga |
306 |
Q |
| |
|
||||| || |||| |||| ||| || || | ||||| |||| |||||||||||||||||||||| |
|
|
| T |
26038250 |
acctgggttttggatccaacaacagcgatgcgacgatttgatgtaatagattgagaaacaaaga |
26038313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 308
Target Start/End: Complemental strand, 26056653 - 26056624
Alignment:
| Q |
279 |
attgaggtaatagattgagaaacaaagatg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
26056653 |
attgaggtaatagattgagaaacaaagatg |
26056624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University