View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19058_high_51 (Length: 302)
Name: NF19058_high_51
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_high_51 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 2089698 - 2089974
Alignment:
| Q |
17 |
agtagaaatatagaagatttctaaacttgaaaaatgcaactccaccataagagttaaaggacaagagttcgccattggtattaagaatcaacaacttcct |
116 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2089698 |
agtagaaatatagaaggtttctaaacttgaaaaatgcaactccaccataagagttaaaggacaagaggtcgccattggtattaagaatcaacaacttcct |
2089797 |
T |
|
| Q |
117 |
attcacttttcgatgaattgtgtgccatgtataagagctaacacccattgtaacacattcaacgagttcaaaacaaacaaaatttacacctctaaatgag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2089798 |
attcacttttcgatgaattgtgtgccatgtataagagctaacacccattgtaacacattcaacgagttcaaaacaaacaaaatttacacctctaaatgag |
2089897 |
T |
|
| Q |
217 |
accaataagatcttgccatcttttagatttatctccctttgacaattatcaaaaacacaatcaggatgaagtattat |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2089898 |
accaataagatcttgccatcttttagatttatctccctttgacaattatcaaaaacacaatcaggatgaagtgttat |
2089974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University