View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19058_high_55 (Length: 284)
Name: NF19058_high_55
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_high_55 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 47108560 - 47108808
Alignment:
| Q |
20 |
caacaatatatttatttcaaatcaagcgtgaattttcatgttgataggaacaattaggaaacgaatgcaaacattccaaacacaatattataaaaggatt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47108560 |
caacaatatatttatttcaaatcaagcgtgaattttcatgttgataggaacaattaggaaacaaatgcaaacattccaaacacaatattataaaaggatt |
47108659 |
T |
|
| Q |
120 |
attttgctttgtgacttacaccgtagagtgcagtatttgttagaggattcatcttttgaaagaaggtcctagagtgagattgtaacacttatcagaatca |
219 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47108660 |
attttgctttgtaacttacaccgtagagtgcagtatttgttagaggattcatc-tttgaaagaaggtcctagagtgagattgtaacacttatcagaatca |
47108758 |
T |
|
| Q |
220 |
ggatccgccttgag---ttctttaaatttgtgtgtaactatggaagaaaa |
266 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| |||||||||||||| |
|
|
| T |
47108759 |
ggatccgccttgagttcttctttagatttgtgtgtcactatggaagaaaa |
47108808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 21 - 263
Target Start/End: Original strand, 48935779 - 48936020
Alignment:
| Q |
21 |
aacaatatatttatttcaaatcaagcgtgaattttcatgttgataggaacaattaggaaacgaatgcaaacattccaaacacaatattataaaaggatta |
120 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48935779 |
aacaatatatttatttcaaatcaagcatgaattttcatgttgataggaacaattaggaaacaaatgaaaacattccaaacacaatattataaaaggatta |
48935878 |
T |
|
| Q |
121 |
ttttgctttgtgacttacaccgtagagtgcagtatttgttagaggattcatcttttgaaagaaggtcctagagtgagattgtaacacttatcagaatcag |
220 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48935879 |
ttttgctttgtaacttacaccgtagagtgcagtatttgttataggattcatc-tttgaaagaaggtcctagagtgagattgtaacactcatcagaatcag |
48935977 |
T |
|
| Q |
221 |
gatccgccttgagttctttaaatttgtgtgtaactatggaaga |
263 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
48935978 |
gatccgccttgagttctttagatttgtgtgtcactatggaaga |
48936020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 36969871 - 36969638
Alignment:
| Q |
20 |
caacaatatatttatttcaaatcaagcgtgaattttcatgttgataggaacaattaggaaacgaatgcaaacattccaaacacaatattataaaaggatt |
119 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36969871 |
caacaatatatttatgtccaatcaagcgtgaattttcatgttgataggaacaattaggaaacgaatgcaaacattccaaacacaatattataaaaggatt |
36969772 |
T |
|
| Q |
120 |
attttgctttgtgacttacaccgtagagtgcagtatttgttagaggattcatcttttgaaagaaggtcctagagtgagattgtaacacttatcagaatca |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36969771 |
attttgctttgtgacttacaccgtagagtgcagtatttgttagaggattcatc-tttgaaagaaggttctagagtgagattgtaacactt---------- |
36969683 |
T |
|
| Q |
220 |
ggatccgccttgagttctttaaatttgtgtgtaactatggaagaaaa |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36969682 |
--atccgccttgagttctttaaatttgtgtgtaactattgaagaaaa |
36969638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University