View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19058_high_7 (Length: 579)

Name: NF19058_high_7
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19058_high_7
NF19058_high_7
[»] chr6 (30 HSPs)
chr6 (3-564)||(765140-765702)
chr6 (250-396)||(4910845-4910993)
chr6 (250-394)||(26280544-26280690)
chr6 (280-394)||(5724662-5724776)
chr6 (135-312)||(46176-46354)
chr6 (262-390)||(6654102-6654232)
chr6 (250-394)||(1485146-1485293)
chr6 (250-399)||(25195366-25195515)
chr6 (250-310)||(17225875-17225937)
chr6 (280-337)||(30927039-30927096)
chr6 (287-399)||(7952748-7952860)
chr6 (280-335)||(852530-852585)
chr6 (250-394)||(34620825-34620971)
chr6 (250-394)||(34748262-34748408)
chr6 (282-316)||(34910964-34910998)
chr6 (282-335)||(2234513-2234566)
chr6 (282-335)||(6895984-6896037)
chr6 (286-335)||(16540105-16540154)
chr6 (250-306)||(947594-947650)
chr6 (282-337)||(3482042-3482097)
chr6 (280-394)||(30926810-30926925)
chr6 (281-394)||(10400728-10400842)
chr6 (262-313)||(19601457-19601510)
chr6 (258-337)||(25195846-25195927)
chr6 (155-196)||(1500036-1500077)
chr6 (288-337)||(4907959-4908008)
chr6 (280-341)||(8854912-8854973)
chr6 (290-387)||(35098500-35098597)
chr6 (141-200)||(1349435-1349492)
chr6 (283-335)||(3436917-3436969)
[»] chr8 (32 HSPs)
chr8 (141-392)||(32927833-32928083)
chr8 (282-394)||(36200166-36200278)
chr8 (173-384)||(26100072-26100283)
chr8 (250-399)||(13384654-13384805)
chr8 (250-337)||(15677815-15677905)
chr8 (250-399)||(37684339-37684490)
chr8 (163-336)||(4662823-4662991)
chr8 (189-393)||(16972006-16972209)
chr8 (280-337)||(32994274-32994331)
chr8 (249-335)||(38868496-38868584)
chr8 (178-333)||(35494990-35495144)
chr8 (160-245)||(10368052-10368137)
chr8 (250-323)||(30098920-30098993)
chr8 (148-337)||(18355750-18355937)
chr8 (157-221)||(13418734-13418798)
chr8 (282-358)||(44141084-44141160)
chr8 (282-337)||(7244635-7244690)
chr8 (280-335)||(38335893-38335948)
chr8 (250-309)||(6027049-6027110)
chr8 (155-208)||(26559859-26559912)
chr8 (155-224)||(37159384-37159453)
chr8 (308-392)||(42455853-42455937)
chr8 (161-224)||(7602042-7602105)
chr8 (158-245)||(9461450-9461536)
chr8 (280-335)||(10367993-10368048)
chr8 (160-234)||(18123324-18123398)
chr8 (160-222)||(32994153-32994215)
chr8 (280-394)||(35495199-35495313)
chr8 (280-337)||(43024833-43024891)
chr8 (301-394)||(7644504-7644596)
chr8 (155-216)||(11038302-11038363)
chr8 (156-196)||(4336565-4336605)
[»] chr5 (23 HSPs)
chr5 (189-337)||(18637280-18637426)
chr5 (252-335)||(9818732-9818818)
chr5 (282-393)||(18851116-18851227)
chr5 (160-335)||(14299328-14299498)
chr5 (156-441)||(27374204-27374483)
chr5 (163-394)||(29922833-29923069)
chr5 (231-359)||(33608477-33608608)
chr5 (199-335)||(6951257-6951392)
chr5 (260-397)||(34250363-34250500)
chr5 (282-335)||(38845441-38845494)
chr5 (250-335)||(31906257-31906344)
chr5 (136-235)||(35108336-35108435)
chr5 (258-338)||(22572412-22572494)
chr5 (355-401)||(25548450-25548496)
chr5 (136-222)||(117387-117471)
chr5 (185-235)||(10859769-10859819)
chr5 (141-187)||(29793862-29793908)
chr5 (157-206)||(707651-707700)
chr5 (282-335)||(11648080-11648133)
chr5 (352-389)||(15955447-15955484)
chr5 (157-205)||(12588023-12588071)
chr5 (280-388)||(32980489-32980596)
chr5 (184-216)||(42724594-42724626)
[»] chr7 (18 HSPs)
chr7 (136-393)||(40491518-40491774)
chr7 (253-388)||(41386818-41386955)
chr7 (189-309)||(45557389-45557508)
chr7 (294-337)||(17111853-17111896)
chr7 (282-394)||(27571801-27571913)
chr7 (280-335)||(30182328-30182383)
chr7 (250-337)||(38123666-38123755)
chr7 (282-335)||(22195862-22195915)
chr7 (298-368)||(40422757-40422828)
chr7 (282-388)||(5489880-5489986)
chr7 (284-334)||(28725088-28725138)
chr7 (282-391)||(41788260-41788367)
chr7 (160-222)||(42481803-42481865)
chr7 (282-392)||(44856843-44856948)
chr7 (253-337)||(45997683-45997770)
chr7 (301-337)||(26984533-26984569)
chr7 (186-226)||(44365541-44365581)
chr7 (295-323)||(45821725-45821753)
[»] chr1 (35 HSPs)
chr1 (136-325)||(7524121-7524309)
chr1 (252-332)||(30557505-30557585)
chr1 (250-389)||(1514288-1514428)
chr1 (280-394)||(28083920-28084034)
chr1 (250-388)||(6021749-6021889)
chr1 (251-337)||(11049246-11049334)
chr1 (250-335)||(48549014-48549099)
chr1 (280-397)||(31362237-31362350)
chr1 (157-337)||(11817227-11817405)
chr1 (282-399)||(47892422-47892539)
chr1 (252-337)||(7790644-7790731)
chr1 (155-214)||(47899371-47899430)
chr1 (280-325)||(51500866-51500911)
chr1 (282-337)||(28287370-28287425)
chr1 (238-332)||(30850386-30850483)
chr1 (250-401)||(47321907-47322059)
chr1 (280-325)||(27849147-27849192)
chr1 (250-335)||(3016160-3016247)
chr1 (136-196)||(22548188-22548248)
chr1 (250-310)||(213537-213599)
chr1 (280-331)||(3515820-3515871)
chr1 (280-347)||(10324970-10325037)
chr1 (284-323)||(34915076-34915115)
chr1 (160-235)||(40642994-40643069)
chr1 (280-326)||(33693028-33693074)
chr1 (246-336)||(47553934-47554027)
chr1 (159-235)||(5268316-5268393)
chr1 (294-394)||(24587848-24587949)
chr1 (160-244)||(3515895-3515979)
chr1 (280-308)||(15084627-15084655)
chr1 (282-310)||(26373575-26373603)
chr1 (160-196)||(32369944-32369980)
chr1 (280-388)||(37522942-37523050)
chr1 (156-196)||(45557437-45557477)
chr1 (285-337)||(50571280-50571332)
[»] chr3 (39 HSPs)
chr3 (153-306)||(35264317-35264469)
chr3 (155-391)||(32523242-32523484)
chr3 (250-337)||(52364047-52364136)
chr3 (291-394)||(1441424-1441527)
chr3 (280-394)||(44771633-44771747)
chr3 (157-308)||(37334944-37335094)
chr3 (157-208)||(42913178-42913229)
chr3 (168-245)||(1441328-1441405)
chr3 (325-398)||(50321835-50321908)
chr3 (282-358)||(35058336-35058412)
chr3 (200-303)||(43776263-43776369)
chr3 (282-394)||(44958640-44958752)
chr3 (155-226)||(44958550-44958621)
chr3 (283-337)||(40147885-40147939)
chr3 (282-391)||(41115395-41115505)
chr3 (270-391)||(5406848-5406969)
chr3 (282-335)||(35058065-35058118)
chr3 (178-321)||(31708170-31708312)
chr3 (262-330)||(42375528-42375596)
chr3 (262-330)||(42404242-42404310)
chr3 (280-388)||(47356277-47356385)
chr3 (160-235)||(31013115-31013190)
chr3 (178-225)||(52925554-52925601)
chr3 (166-216)||(584712-584762)
chr3 (281-394)||(3845147-3845258)
chr3 (158-199)||(12674679-12674720)
chr3 (283-312)||(31492788-31492817)
chr3 (159-196)||(32112130-32112167)
chr3 (159-200)||(44489651-44489692)
chr3 (250-335)||(4526130-4526217)
chr3 (294-358)||(7717367-7717431)
chr3 (160-224)||(30958145-30958209)
chr3 (160-224)||(30973957-30974021)
chr3 (282-337)||(32111990-32112046)
chr3 (282-337)||(40339222-40339278)
chr3 (291-335)||(40736580-40736624)
chr3 (160-235)||(42644303-42644379)
chr3 (246-335)||(42913052-42913143)
chr3 (282-394)||(54596757-54596869)
[»] chr4 (44 HSPs)
chr4 (280-399)||(35064997-35065116)
chr4 (250-372)||(32818370-32818494)
chr4 (250-394)||(16551896-16552040)
chr4 (282-394)||(2635102-2635214)
chr4 (157-244)||(43868224-43868311)
chr4 (250-338)||(21691212-21691302)
chr4 (250-399)||(46344833-46344982)
chr4 (282-335)||(8604656-8604709)
chr4 (280-337)||(14596685-14596742)
chr4 (141-222)||(24364086-24364167)
chr4 (280-337)||(30357508-30357565)
chr4 (202-391)||(25318989-25319178)
chr4 (262-337)||(9134606-9134681)
chr4 (250-317)||(33456390-33456457)
chr4 (278-387)||(33560600-33560710)
chr4 (250-374)||(31012738-31012865)
chr4 (157-214)||(34155811-34155868)
chr4 (250-390)||(22683806-22683949)
chr4 (253-358)||(26617443-26617550)
chr4 (282-358)||(50061662-50061738)
chr4 (254-333)||(41370016-41370095)
chr4 (280-330)||(16643981-16644031)
chr4 (280-330)||(49138795-49138845)
chr4 (286-340)||(53713599-53713653)
chr4 (295-388)||(54705437-54705531)
chr4 (284-337)||(1616387-1616439)
chr4 (282-335)||(9064229-9064282)
chr4 (315-392)||(48045768-48045845)
chr4 (282-337)||(18597035-18597091)
chr4 (280-336)||(30357644-30357700)
chr4 (265-337)||(55186979-55187051)
chr4 (293-347)||(11271582-11271637)
chr4 (157-196)||(20911809-20911848)
chr4 (155-226)||(22250332-22250403)
chr4 (282-313)||(45011894-45011925)
chr4 (254-321)||(42971906-42971975)
chr4 (159-306)||(4243414-4243561)
chr4 (155-192)||(23335268-23335305)
chr4 (136-196)||(53158948-53159009)
chr4 (280-347)||(2206503-2206571)
chr4 (141-193)||(25405729-25405781)
chr4 (251-335)||(25927306-25927390)
chr4 (280-356)||(30889764-30889840)
chr4 (285-337)||(55927807-55927859)
[»] chr2 (28 HSPs)
chr2 (189-399)||(30503143-30503350)
chr2 (280-335)||(42740975-42741030)
chr2 (201-394)||(16518718-16518909)
chr2 (254-394)||(12037000-12037142)
chr2 (250-337)||(43501121-43501208)
chr2 (280-392)||(2002727-2002839)
chr2 (200-312)||(33502258-33502366)
chr2 (158-244)||(10618861-10618947)
chr2 (136-302)||(11759748-11759913)
chr2 (155-208)||(38129421-38129474)
chr2 (250-375)||(22535956-22536083)
chr2 (250-394)||(33502848-33502995)
chr2 (250-338)||(44439248-44439339)
chr2 (189-335)||(4894099-4894244)
chr2 (250-337)||(33019156-33019245)
chr2 (141-206)||(11650665-11650730)
chr2 (155-224)||(36307073-36307142)
chr2 (280-333)||(42982544-42982597)
chr2 (352-393)||(43501083-43501124)
chr2 (136-196)||(37745787-37745847)
chr2 (159-276)||(680203-680316)
chr2 (167-222)||(42774777-42774832)
chr2 (281-310)||(7630216-7630245)
chr2 (250-316)||(8800698-8800766)
chr2 (252-394)||(10644543-10644686)
chr2 (282-383)||(31453333-31453434)
chr2 (315-379)||(680344-680408)
chr2 (159-235)||(43717422-43717498)
[»] scaffold0361 (1 HSPs)
scaffold0361 (178-397)||(14045-14262)
[»] scaffold0168 (1 HSPs)
scaffold0168 (282-394)||(31765-31877)
[»] scaffold0005 (1 HSPs)
scaffold0005 (280-337)||(220636-220693)
[»] scaffold0036 (1 HSPs)
scaffold0036 (155-216)||(859-920)
[»] scaffold0283 (1 HSPs)
scaffold0283 (184-216)||(18568-18600)


Alignment Details
Target: chr6 (Bit Score: 531; Significance: 0; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 3 - 564
Target Start/End: Original strand, 765140 - 765702
Alignment:
Q  3 acaaactcatgggatcagaaagcttcatgctaaatgcattttatagttacatctatatatgt-agtccgtgtgtgaatcctaattgaacaggaaattatt 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  765140 acaaactcatgggatcagaaagcttcatgctaaatgcattttatagttacatctatatatgtgagtcggtgtgtgaatcctaattgaacaggaaattatt 765239  T
Q  102 atgattaacgtgtgtgaaccgaataagtgtatcatatggttggttttgtggtcacaaaaattgattttgagtgaaatgattgtgtaaaattgattctaac 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  765240 atgattaacgtgtgtgaaccgaataagtgtatcatatggttggttttgtggtcacaacaattgattttgagtgaaatgattgtgtaaaattgattctaac 765339  T
Q  202 taaaagtaagttgaaagtaaagtgacttgtgtttccatacattcttcttgtaaaaatgagttgaactataaatttctttaaaaatcaattctagaatcaa 301  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  765340 taaaagtaagttgaaagtaaagtgatttgtgtttccatacattcttcttgtaaaaatgagttgaactataaatttctttaataatcaattctagaatcaa 765439  T
Q  302 aagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcagaatcaattctacacatccaca 401  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  765440 aagctacaaatcatagcttcaagtagaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcagaatcaattctacacatccaca 765539  T
Q  402 tccagaatcaaatttagctcatctagaaatgaaatcaaacttgaataaaagagaagagaaagaaaaagttagttacagtgagaggcaagaaatcattgcg 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  765540 tccagaatcaaatttagctcatctagaaatgaaatcaaacttgaataaaagagaagagaaagaaaaagttagttacagtgagaggcaagaaatcattgcg 765639  T
Q  502 agcaatttcatctcgagaggtattaaccgccgaaaggattttgttatcttccatcgtcaaaac 564  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  765640 agcaatttcatctcgagaggtattaaccgctgaaaggattttgttatcttccatcgtcaaaac 765702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 250 - 396
Target Start/End: Complemental strand, 4910993 - 4910845
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttcttta--aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaa 347  Q
    ||||||| ||||| ||||||||||||| | |   |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| || ||    
T  4910993 tgtaaaagtgagtcgaactataaatttgtatgtgaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatttttgaggcagaa 4910894  T
Q  348 ccagttctacttaaaagcaaccaaacacgtcagaatcaattctacacat 396  Q
     || ||||| || |   |||||||||| |||||||||||||||||||||    
T  4910893 tcaattctaattgacgacaaccaaacatgtcagaatcaattctacacat 4910845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 250 - 394
Target Start/End: Complemental strand, 26280690 - 26280544
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttctt--taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaa 347  Q
    ||||||| |||||| |||||||||||| |   |||||||||||| | ||||||||| ||||||||  ||||||||||| ||||||||||||||| |||||    
T  26280690 tgtaaaagtgagtttaactataaatttgtacgtaaaaatcaattttggaatcaaaaactacaaattctagcttcaagtggaatcaattcttgaggcaaaa 26280591  T
Q  348 ccagttctacttaaaagcaaccaaacacgtcagaatcaattctacac 394  Q
     || ||||||  |||| ||| |||||| |||| ||||||||||||||    
T  26280590 tcaattctaccaaaaaacaatcaaacatgtcaaaatcaattctacac 26280544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 280 - 394
Target Start/End: Original strand, 5724662 - 5724776
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtca 379  Q
    |||||||||||| |||||| ||||| |||||||| ||||||||||| ||||||||| | ||| ||||| || |||||| | |||||| ||||||| ||||    
T  5724662 taaaaatcaattatagaataaaaagttacaaatcctagcttcaagtagaatcaattttggaggcaaaatcaattctacctgaaagcatccaaacatgtca 5724761  T
Q  380 gaatcaattctacac 394  Q
    |||||||||||||||    
T  5724762 gaatcaattctacac 5724776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 135 - 312
Target Start/End: Original strand, 46176 - 46354
Alignment:
Q  135 atatggttggttttgtggtcacaaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtt 234  Q
    ||||| |||||||||   || ||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| || |||||| | |||||||    
T  46176 atatgtttggttttgctttcgcaagaattgattttgagtgaattgattctgtaaaattgattctaactaaaagtgagttgcaattaaagttatttgtgtt 46275  T
Q  235 tccatacattcttcttgtaaaaatgagttgaactat--aaatttctt--taaaaatcaattctagaatcaaaagctacaaat 312  Q
    |  |||||   ||| || |||| ||||||||| |||  |||||| ||  | | |||| ||||||||||||||||||||||||    
T  46276 tggataca---ttcgtggaaaagtgagttgaattataaaaatttgtttgttagaatctattctagaatcaaaagctacaaat 46354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 262 - 390
Target Start/End: Original strand, 6654102 - 6654232
Alignment:
Q  262 ttgaactataaatttcttta--aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctactt 359  Q
    ||||||||||||||||| |   |||||||| |||||||| |||||||||||||| ||||||||||| |||| ||||||  ||  |||| || |||||||     
T  6654102 ttgaactataaatttctgtgtgaaaatcaaatctagaattaaaagctacaaatcctagcttcaagtagaattaattctgaaggaaaaatcaattctactc 6654201  T
Q  360 aaaagcaaccaaacacgtcagaatcaattct 390  Q
    || |||||||||||| | || ||||||||||    
T  6654202 aatagcaaccaaacatgacataatcaattct 6654232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 394
Target Start/End: Original strand, 1485146 - 1485293
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttc--tttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaa 347  Q
    ||||||| |||||||||| ||||||||   | | ||||||||||||||||||||||||| ||| |  ||| ||||||| |||||||||||  || |||||    
T  1485146 tgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagctccaatttctagattcaagtagaatcaattctaaaggcaaaa 1485245  T
Q  348 ccagttctacttaaaagcaaccaaacacgtc-agaatcaattctacac 394  Q
      | ||||||| || ||||| |||||| ||| ||||||||||||||||    
T  1485246 ttaattctactcaagagcaaacaaacatgtcaagaatcaattctacac 1485293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 399
Target Start/End: Original strand, 25195366 - 25195515
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttcttta--aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaa 347  Q
    ||||||| ||||||||| | ||||||| | ||  |||||||||| |||||| |||| |||||||||   ||||||||| ||||||||||  ||| || ||    
T  25195366 tgtaaaagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaa 25195463  T
Q  348 ccagttctacttaaaagcaaccaaacacgtcagaatcaattctacacatcca 399  Q
     || || ||||  | |||||||||||| ||||||||||||| ||||||||||    
T  25195464 tcaattatactcgatagcaaccaaacatgtcagaatcaattatacacatcca 25195515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 17225937 - 17225875
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttcttt--aaaaatcaattctagaatcaaaagctacaa 310  Q
    ||||||| ||||||||||||||||||| | |  ||||||||||||||||||||||||||||||    
T  17225937 tgtaaaactgagttgaactataaatttgtatgtaaaaatcaattctagaatcaaaagctacaa 17225875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 337
Target Start/End: Complemental strand, 30927096 - 30927039
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    ||||||||||||||| ||||||||||||| |||| |||||||||||  ||||||||||    
T  30927096 taaaaatcaattctataatcaaaagctacgaatcttagcttcaagtataatcaattct 30927039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 399
Target Start/End: Original strand, 7952748 - 7952860
Alignment:
Q  287 caattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcagaatcaa 386  Q
    ||||||||||||||||||||||||||| | ||||||||| |||| |||| | ||| |||||  |  || ||| |||| ||| |||||| |||| ||||||    
T  7952748 caattctagaatcaaaagctacaaatcctcgcttcaagtagaataaattttggaggcaaaattaaatcaactcaaaaccaatcaaacatgtcataatcaa 7952847  T
Q  387 ttctacacatcca 399  Q
    || ||||| ||||    
T  7952848 ttttacacctcca 7952860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 852585 - 852530
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    ||||||||||||||||||||| || |||||| |  |||||||||||||||||||||    
T  852585 taaaaatcaattctagaatcagaacctacaatttctagcttcaagttgaatcaatt 852530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 394
Target Start/End: Complemental strand, 34620971 - 34620825
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttc--tttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaa 347  Q
    ||||||| |||||||||  ||||||||   | ||||||||||||||||||||| ||||||  | |  |||||||| || ||||||||||  ||| |||||    
T  34620971 tgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagctatgatttctagcttcatgtagaatcaattccggaggcaaaa 34620872  T
Q  348 ccagttctacttaaaagcaaccaaacacgtcagaatcaattctacac 394  Q
      | ||||| || | || ||||||||| |||| ||||||||||||||    
T  34620871 ttaattctagtttataggaaccaaacatgtcaaaatcaattctacac 34620825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 394
Target Start/End: Complemental strand, 34748408 - 34748262
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttc--tttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaa 347  Q
    ||||||| |||||||||  ||||||||   | ||||||||||||||||||||| ||||||  | |  |||||||| || ||||||||||  ||| |||||    
T  34748408 tgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagctatgatttctagcttcatgtagaatcaattccggaggcaaaa 34748309  T
Q  348 ccagttctacttaaaagcaaccaaacacgtcagaatcaattctacac 394  Q
      | ||||| || | || ||||||||| |||| ||||||||||||||    
T  34748308 ttaattctagtttataggaaccaaacatgtcaaaatcaattctacac 34748262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 34910998 - 34910964
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcata 316  Q
    |||||||||||||||||||||||||||||||||||    
T  34910998 aaaatcaattctagaatcaaaagctacaaatcata 34910964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 2234566 - 2234513
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    ||||||||||||||||||||||||| ||  |  |||||||||||||||||||||    
T  2234566 aaaatcaattctagaatcaaaagcttcagtttttagcttcaagttgaatcaatt 2234513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 6895984 - 6896037
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    ||||| |||||||||||||||||||||||||| || ||||| || |||||||||    
T  6895984 aaaataaattctagaatcaaaagctacaaatcctaacttcaggtagaatcaatt 6896037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 16540154 - 16540105
Alignment:
Q  286 tcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    ||||||| | |||||||||||||||||| ||||||||||| |||||||||    
T  16540154 tcaattcaataatcaaaagctacaaatcctagcttcaagtagaatcaatt 16540105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 947650 - 947594
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttctttaaaaatcaattctagaatcaaaagct 306  Q
    ||||||| ||||||||| ||||| | | ||||| |||||||||||||||||||||||    
T  947650 tgtaaaagtgagttgaattataattgtgtttaagaatcaattctagaatcaaaagct 947594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 337
Target Start/End: Complemental strand, 3482097 - 3482042
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    ||||||||||||| ||||||| |||||||||| || ||||||||  ||||||||||    
T  3482097 aaaatcaattctaaaatcaaaggctacaaatcttaacttcaagtataatcaattct 3482042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 394
Target Start/End: Original strand, 30926810 - 30926925
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtt-gaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtc 378  Q
    ||||||||||||||||||| |||| || ||| |  |||||||||||| ||||| |||||  ||||||||| | |||||||  | ||| |||||||| |||    
T  30926810 taaaaatcaattctagaataaaaaactccaatttctagcttcaagttagaatccattctaaagccaaaactaattctactcgagagcgaccaaacatgtc 30926909  T
Q  379 agaatcaattctacac 394  Q
    | || ||||| |||||    
T  30926910 aaaagcaattatacac 30926925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 394
Target Start/End: Original strand, 10400728 - 10400842
Alignment:
Q  281 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagc-aaccaaacacgtca 379  Q
    ||||||||||| |||||||||| |||| ||||| || |||||| | |||| |||||| | | ||||| || |||||||  ||||| |||||||||  |||    
T  10400728 aaaaatcaattttagaatcaaaggctagaaatcctaacttcaactagaattaattctagtggcaaaaacaattctactcgaaagcaaaccaaacatatca 10400827  T
Q  380 gaatcaattctacac 394  Q
     |||||||| |||||    
T  10400828 aaatcaattatacac 10400842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 313
Target Start/End: Original strand, 19601457 - 19601510
Alignment:
Q  262 ttgaactataaatttcttt--aaaaatcaattctagaatcaaaagctacaaatc 313  Q
    ||||||||||||||| |||  |||||||| || |||||||||||||||||||||    
T  19601457 ttgaactataaatttatttgtaaaaatcagttatagaatcaaaagctacaaatc 19601510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 337
Target Start/End: Complemental strand, 25195927 - 25195846
Alignment:
Q  258 tgagttgaactataaatttcttt--aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    ||||||||||||||||||| | |  | || |||||||||||||||||||||| ||||| ||| || || | |||||||||||    
T  25195927 tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagttttaattagaatcaattct 25195846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 1500077 - 1500036
Alignment:
Q  155 acaaaaattgattttgagtgaaatgattgtgtaaaattgatt 196  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  1500077 acaaaaattgattttgactgaattgattttgtaaaattgatt 1500036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 4908008 - 4907959
Alignment:
Q  288 aattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    |||| ||||||||||| ||||||||||||||||||| |  ||||||||||    
T  4908008 aattatagaatcaaaaactacaaatcatagcttcaaataaaatcaattct 4907959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 341
Target Start/End: Complemental strand, 8854973 - 8854912
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgag 341  Q
    ||||||||||||||| | |||||| ||||||||  |||||||| || ||| |||||||||||    
T  8854973 taaaaatcaattctatagtcaaaaactacaaattgtagcttcatgtagaaacaattcttgag 8854912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 35098500 - 35098597
Alignment:
Q  290 ttctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcagaatcaat 387  Q
    |||||||||||||||||| |||||  ||  | |||| |||||||| || ||  ||||| || ||||||| ||||| ||||||||| |||| |||||||    
T  35098500 ttctagaatcaaaagctaaaaatcccagtattaagtagaatcaatcctggaagcaaaatcaattctactcaaaagtaaccaaacatgtcaaaatcaat 35098597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 1349492 - 1349435
Alignment:
Q  141 ttggttttgtggtcacaaaaattgattttgagtgaaatgattgtgtaaaattgattctaa 200  Q
    |||||| ||| || |||||||||||||  ||||||| ||||| |||||||||||||||||    
T  1349492 ttggttgtgtagtgacaaaaattgatt--gagtgaattgattttgtaaaattgattctaa 1349435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 3436917 - 3436969
Alignment:
Q  283 aaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    ||||||||| |||||||||||| ||||||| |||| ||||| | |||||||||    
T  3436917 aaatcaattatagaatcaaaagttacaaattatagattcaactagaatcaatt 3436969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 9e-50; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 141 - 392
Target Start/End: Complemental strand, 32928083 - 32927833
Alignment:
Q  141 ttggttttgtggtcacaaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccata 240  Q
    |||||| || ||| |||| ||||||||||||| ||| ||||| ||||||||||||||| ||||||| | ||||||| | ||||||| ||||||||  |||    
T  32928083 ttggttctgcggtaacaataattgattttgagggaattgattatgtaaaattgattcttactaaaattgagttgaaggcaaagtgatttgtgtttggata 32927984  T
Q  241 cattcttcttgtaaaaatgagttgaactataaatttcttt--aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattctt 338  Q
    ||||| |   |||||| ||||||||||||||||||| | |  |||||| ||||||| |||||||||||||||||| ||||||||||| ||||||| | ||    
T  32927983 cattcat---gtaaaagtgagttgaactataaatttgtgtgtaaaaatgaattctataatcaaaagctacaaatcctagcttcaagtagaatcaactatt 32927887  T
Q  339 gagccaaaaccagttctacttaaaagcaaccaaacacgtcagaatcaattctac 392  Q
    ||| ||||| || |||||||  |||||||||||||| |||||| ||||||||||    
T  32927886 gaggcaaaatcaattctactggaaagcaaccaaacatgtcagagtcaattctac 32927833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 282 - 394
Target Start/End: Original strand, 36200166 - 36200278
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcaga 381  Q
    |||||||||||||||||||||| | |||||||||| |||||||||||||||||||| ||| || || || ||||||||   ||||| |||||| |||| |    
T  36200166 aaaatcaattctagaatcaaaatcgacaaatcataacttcaagttgaatcaattctggagacataaacaattctacttgccagcaagcaaacatgtcata 36200265  T
Q  382 atcaattctacac 394  Q
    |||||||||||||    
T  36200266 atcaattctacac 36200278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 173 - 384
Target Start/End: Original strand, 26100072 - 26100283
Alignment:
Q  173 tgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccatacattcttcttgtaaaaatgagttgaactataa 272  Q
    |||| ||||| ||||||||||||||| |||||||   ||||||| ||||||  | ||||||||  || ||||  |   |||||| |||||||||| ||||    
T  26100072 tgaattgattatgtaaaattgattctgactaaaaacgagttgaaggtaaagctatttgtgtttggatgcatttat---gtaaaagtgagttgaaccataa 26100168  T
Q  273 atttcttt--aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgag-ccaaaaccagttctacttaaaagcaacc 369  Q
    |||| | |  ||||||||||| ||||||||||||||||||||| ||||||||| | ||| ||||||| ||| |||||  || ||||||||  ||||||||    
T  26100169 atttgtgtgtaaaaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagaccaaagtcaattctacttggaagcaacc 26100268  T
Q  370 aaacacgtcagaatc 384  Q
    ||||| || ||||||    
T  26100269 aaacatgttagaatc 26100283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 250 - 399
Target Start/End: Original strand, 13384654 - 13384805
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttcttta--aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaa 347  Q
    ||||||| ||||||||||||||||||| | |   |||||||||||||||||||||||||||||||  ||||||||| | ||||||||| | |||  | ||    
T  13384654 tgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaattttagcttcaaatagaatcaattttggagaaagaa 13384753  T
Q  348 ccagttctacttaaaagcaaccaaacacgtcagaatcaattctacacatcca 399  Q
    | | ||| |||  | | |||||||||| ||||||||||||||||||| ||||    
T  13384754 caaattcgactcgacaacaaccaaacatgtcagaatcaattctacacctcca 13384805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 250 - 337
Target Start/End: Original strand, 15677815 - 15677905
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttcttt---aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    ||||| ||||||||||||||||||||| | |   |||||||||||||| |||||||||||| ||||| ||||||||||| |||||||||||    
T  15677815 tgtaacaatgagttgaactataaatttgtgtgtaaaaaatcaattctataatcaaaagctataaatcctagcttcaagtagaatcaattct 15677905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 250 - 399
Target Start/End: Complemental strand, 37684490 - 37684339
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttcttta--aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaa 347  Q
    ||||||| ||||||||| ||||||||| |  |  |||||||||| ||||||||||||| ||||||| || |||||||| ||||||||||| ||| |||||    
T  37684490 tgtaaaagtgagttgaattataaatttttgcattaaaatcaattttagaatcaaaagccacaaatcctaacttcaagtagaatcaattctggagacaaaa 37684391  T
Q  348 ccagttctacttaaaagcaaccaaacacgtcagaatcaattctacacatcca 399  Q
     || |||||||  | | ||||||||||  || ||||||||| ||||| ||||    
T  37684390 tcaattctactccacaacaaccaaacatttcggaatcaattttacacctcca 37684339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 163 - 336
Target Start/End: Original strand, 4662823 - 4662991
Alignment:
Q  163 tgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccatacattcttcttgtaaaaatgagt 262  Q
    |||||||||||||| ||||| ||||||||||||||| ||||||| | |||| || |||    || ||||||||  ||||||||     | ||||  ||||    
T  4662823 tgattttgagtgaattgattatgtaaaattgattctgactaaaactgagttaaatgta----gatttgtgtttggatacattcac---ggaaaagcgagt 4662915  T
Q  263 tgaactataaatttcttt--aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattc 336  Q
    ||||||||| |||| | |  ||||||||||||||||| ||||||||||||||| ||||||||||| |||| |||||    
T  4662916 tgaactatacatttgtgtgtaaaaatcaattctagaaacaaaagctacaaatcctagcttcaagtagaataaattc 4662991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 189 - 393
Target Start/End: Original strand, 16972006 - 16972209
Alignment:
Q  189 aattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccatacattcttcttgtaaaaatgagttgaactataaatttct--ttaaaaat 286  Q
    |||||||||  ||||||||| ||||||| ||||| ||| ||||||||  |||||||| |   |||||| ||| |||||| |||||||| |  ||||||||    
T  16972006 aattgattcagactaaaagtgagttgaaggtaaaatgatttgtgtttgaatacattcat---gtaaaagtgatttgaacaataaatttgtgtttaaaaat 16972102  T
Q  287 caattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcagaatcaa 386  Q
    |||||||| ||| |||| ||||||||  ||||||||| |  |||||| |||  || ||||| || |||||||  | |||| |||| || ||| |||||||    
T  16972103 caattctaaaattaaaaactacaaattctagcttcaaatacaatcaactctgaaggcaaaatcaattctactcgatagcatccaatcatgtctgaatcaa 16972202  T
Q  387 ttctaca 393  Q
    |||||||    
T  16972203 ttctaca 16972209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 280 - 337
Target Start/End: Original strand, 32994274 - 32994331
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||    
T  32994274 taaaaatcaattctagactcaaaagctagaaatcatagcttcaagtagaatcaattct 32994331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 38868584 - 38868496
Alignment:
Q  249 ttgtaaaaatgagttgaactataaatttcttta--aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    |||||||| ||||||||||||||||||| | |   |||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||    
T  38868584 ttgtaaaattgagttgaactataaatttgtgtgtgaaaatcaattatagaaccaaaagctacaaatcttagcttcaagtagaatcaatt 38868496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 333
Target Start/End: Complemental strand, 35495144 - 35494990
Alignment:
Q  178 tgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccatacattcttcttgtaaaaatgagttgaactataaatttc 277  Q
    ||||| |||||||||| |||| | |||||||  ||||||  |||||||| ||||||||  ||| |||| |   |||||| | |||||||||||| ||||     
T  35495144 tgattatgtaaaattgcttctgattaaaagtgggttgaatataaagtgatttgtgtttggatatattcat---gtaaaagtaagttgaactatagatttg 35495048  T
Q  278 ttt--aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaa 333  Q
    | |  ||||| ||||||||||||||||||||||||||| |||||||| || |||||||    
T  35495047 tgtgtaaaaaacaattctagaatcaaaagctacaaatcctagcttcatgtagaatcaa 35494990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 245
Target Start/End: Complemental strand, 10368137 - 10368052
Alignment:
Q  160 aattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccatacattc 245  Q
    ||||||||||||||||| || || ||||||||||||| | | ||||||| ||||||| ||||||||| ||||||||  ||||||||    
T  10368137 aattgattttgagtgaattgtttttgtaaaattgattttgagtaaaagtgagttgaaggtaaagtgatttgtgtttagatacattc 10368052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 30098993 - 30098920
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttctttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaa 323  Q
    ||||||| |||||| |||||||||||| | ||||||| |||||||||||| ||||||||||||  |||||||||    
T  30098993 tgtaaaagtgagttaaactataaatttttgtaaaaattaattctagaatcgaaagctacaaattctagcttcaa 30098920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 148 - 337
Target Start/End: Original strand, 18355750 - 18355937
Alignment:
Q  148 tgtggtcacaaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaa-gtgacttgtgtttccatacattct 246  Q
    |||||| | |||||||||||||||||||| ||||| ||||||||||||| | | |||||||   ||| |  |||| |||| || | |||  |||||||      
T  18355750 tgtggtgataaaaattgattttgagtgaattgattttgtaaaattgattatgattaaaagtggcttggagataaaagtgatttatatttggatacatttg 18355849  T
Q  247 tcttgtaaaaatgagttgaactataaatttctttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    |   ||||||  |||||||||| ||||||| | |||||||||||| ||||||||||||  ||||||| |||||||||   |||||||||||    
T  18355850 t---gtaaaagggagttgaactttaaatttgtgtaaaaatcaattttagaatcaaaagacacaaatcctagcttcaatcagaatcaattct 18355937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 13418734 - 13418798
Alignment:
Q  157 aaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaa 221  Q
    |||||||||||||||||||| |||||  ||| |||||||||| ||||||||| ||||||| ||||    
T  13418734 aaaaattgattttgagtgaattgattaggtagaattgattctgactaaaagtgagttgaatgtaa 13418798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 44141084 - 44141160
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctact 358  Q
    |||||||| ||||||||||||| ||||||||| || |||||||| ||||||||| | ||| ||||| || |||||||    
T  44141084 aaaatcaactctagaatcaaaaactacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctact 44141160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 337
Target Start/End: Original strand, 7244635 - 7244690
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    |||||||||||||||||||||| ||||| ||| ||| ||||||| |||||||||||    
T  7244635 aaaatcaattctagaatcaaaaactacatatcttagtttcaagtagaatcaattct 7244690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 38335893 - 38335948
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    ||||||||||||||| |||||||||| ||||||| ||||||||| | |||||||||    
T  38335893 taaaaatcaattctaaaatcaaaagcaacaaatcttagcttcaactggaatcaatt 38335948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 309
Target Start/End: Original strand, 6027049 - 6027110
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttcttta--aaaatcaattctagaatcaaaagctaca 309  Q
    |||||||||||||| |||| ||||||| | ||  ||||||||||||||||||||||||||||    
T  6027049 tgtaaaaatgagttaaactgtaaatttgtatatgaaaatcaattctagaatcaaaagctaca 6027110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 26559859 - 26559912
Alignment:
Q  155 acaaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagt 208  Q
    |||| ||||||||||||||||| |||||   |||||||||||||||||||||||    
T  26559859 acaagaattgattttgagtgaattgatttgataaaattgattctaactaaaagt 26559912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 37159384 - 37159453
Alignment:
Q  155 acaaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagt 224  Q
    ||||||||| |||||||  ||| ||||||||||||||| ||| ||||||||||  ||||||| |||||||    
T  37159384 acaaaaattaattttgaacgaattgattgtgtaaaattaattttaactaaaagggagttgaatgtaaagt 37159453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 392
Target Start/End: Complemental strand, 42455937 - 42455853
Alignment:
Q  308 caaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcagaatcaattctac 392  Q
    ||||| ||||| |||||| ||||||||| | ||| || || || | ||||| ||||||||||||||| |||| ||||||||||||    
T  42455937 caaattatagcatcaagtagaatcaattatggaggcagaatcaatcctactcaaaagcaaccaaacatgtcaaaatcaattctac 42455853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 7602042 - 7602105
Alignment:
Q  161 attgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagt 224  Q
    |||||||||||||||| ||||| | |||||||||||| |||||||| | | ||||| |||||||    
T  7602042 attgattttgagtgaattgattttataaaattgattcgaactaaaaatgaattgaatgtaaagt 7602105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 245
Target Start/End: Original strand, 9461450 - 9461536
Alignment:
Q  158 aaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccatacattc 245  Q
    |||||||||||||||| || ||||| | ||||||||||||| ||||||| | | ||| || |||||||| ||||||||  ||||||||    
T  9461450 aaaattgattttgagttaattgattatttaaaattgattctgactaaaa-tgaattgcaactaaagtgatttgtgtttggatacattc 9461536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 10368048 - 10367993
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    ||||||| ||||||||||||||||||| |||||| |||| |||||| ||| |||||    
T  10368048 taaaaatgaattctagaatcaaaagctgcaaatcctagcctcaagtagaaccaatt 10367993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 18123398 - 18123324
Alignment:
Q  160 aattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtt 234  Q
    ||||||||| ||||||| ||||  |||||||| || ||||||||||||| | ||||| ||||| ||| |||||||    
T  18123398 aattgatttagagtgaattgatgatgtaaaatcgactctaactaaaagtgaattgaaggtaaaatgatttgtgtt 18123324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 32994153 - 32994215
Alignment:
Q  160 aattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaa 222  Q
    |||||||||||| |||| ||||| |||||||||||||||  || ||||| ||||||| |||||    
T  32994153 aattgattttgaatgaactgattatgtaaaattgattctggctgaaagtgagttgaaggtaaa 32994215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 394
Target Start/End: Complemental strand, 35495313 - 35495199
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtca 379  Q
    |||||||||||| |||||||| || ||| | |   ||||||||||| ||||||||||| ||| |||||  | ||||| || | || ||| ||||| ||||    
T  35495313 taaaaatcaattatagaatcagaatctagatagtgtagcttcaagtagaatcaattctagaggcaaaattaattctaatttagagaaacaaaacatgtca 35495214  T
Q  380 gaatcaattctacac 394  Q
     ||||||||||||||    
T  35495213 aaatcaattctacac 35495199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 337
Target Start/End: Complemental strand, 43024891 - 43024833
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatag-cttcaagttgaatcaattct 337  Q
    |||||||||||| |||||||| ||||||||||||||||  |||||||  ||||||||||    
T  43024891 taaaaatcaattttagaatcacaagctacaaatcatagttttcaagtataatcaattct 43024833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 394
Target Start/End: Complemental strand, 7644596 - 7644504
Alignment:
Q  301 aaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcagaatcaattctacac 394  Q
    ||||||||||||| |||||| |||| |||||||||||  | ||| || || ||||||   |||||||||||| | ||||||||||||| |||||    
T  7644596 aaagctacaaatcctagctttaagtagaatcaattctaaatccataatcaattctacacgaaagcaaccaaa-atgtcagaatcaattgtacac 7644504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 11038363 - 11038302
Alignment:
Q  155 acaaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaa 216  Q
    ||||||||||||| ||||| || |||||   ||||||||||| ||||||||||| |||||||    
T  11038363 acaaaaattgattatgagttaattgattccttaaaattgattttaactaaaagtgagttgaa 11038302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 4336565 - 4336605
Alignment:
Q  156 caaaaattgattttgagtgaaatgattgtgtaaaattgatt 196  Q
    ||||| ||||||||||||||| ||||| |||||||||||||    
T  4336565 caaaatttgattttgagtgaattgattttgtaaaattgatt 4336605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 189 - 337
Target Start/End: Complemental strand, 18637426 - 18637280
Alignment:
Q  189 aattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccatacattcttcttgtaaaaatgagttgaactataaatttctttaaaaatca 288  Q
    |||||||||||||||||||| |||||| |||| ||||| ||||||||  ||| |||||| ||  |||| ||||||||||||||||| | | |||||||||    
T  18637426 aattgattctaactaaaagtgagttgagagtacagtgatttgtgtttggatagattcttttt--aaaattgagttgaactataaatgtgtgtaaaaatca 18637329  T
Q  289 attctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    ||||||||||||||||||||  ||| ||||||||||| |||||||||||    
T  18637328 attctagaatcaaaagctacttatcttagcttcaagtggaatcaattct 18637280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 252 - 335
Target Start/End: Complemental strand, 9818818 - 9818732
Alignment:
Q  252 taaaaatgagttgaactataaatttcttt---aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    ||||| ||||||||||||||||||| | |   ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9818818 taaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 9818732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 282 - 393
Target Start/End: Original strand, 18851116 - 18851227
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcaga 381  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| | | |  |  | || ||||| || | |||||||||||||||||||    
T  18851116 aaaatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattatagggataggatcaattctaattgatagcaaccaaacacgtcaga 18851215  T
Q  382 atcaattctaca 393  Q
     |||||||||||    
T  18851216 gtcaattctaca 18851227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 160 - 335
Target Start/End: Complemental strand, 14299498 - 14299328
Alignment:
Q  160 aattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccatacattcttcttgtaaaaatg 259  Q
    |||| |||||||||||| ||||||||||||||||||||||  ||||||| ||||||| ||||||||| ||||||||  ||||| | |       ||| ||    
T  14299498 aatttattttgagtgaattgattgtgtaaaattgattctagataaaagtgagttgaaggtaaagtgatttgtgtttgaatacaatgt-------aaagtg 14299406  T
Q  260 agttgaactataaatt--tctttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    | | ||||||||||||  | | | |||| |||||||||||| |||| ||||||||| || |||||||| |||||||||    
T  14299405 aatcgaactataaatttatgtgtgaaaaccaattctagaataaaaaactacaaatcctaacttcaagtagaatcaatt 14299328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 156 - 441
Target Start/End: Original strand, 27374204 - 27374483
Alignment:
Q  156 caaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccatacattcttcttgtaaa 255  Q
    ||||||||||||| || |||| ||||| ||||||||||||||  |||||||||||||| |||||||||||| ||||| ||  ||||    ||| ||||||    
T  27374204 caaaaattgattt-gaatgaattgattctgtaaaattgattccgactaaaagtaagttaaaagtaaagtgatttgtgattgaatac---tttcatgtaaa 27374299  T
Q  256 aatgagttgaactataaatt--tctttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagtt 353  Q
      |||||| |||  ||||||  | | |||||||||||| |  ||| ||    |||||||| || |||||||| |||||||||||| || |||||  | ||    
T  27374300 tgtgagttaaaccgtaaatttgtatgtaaaaatcaattatgaaatgaa---ttacaaatcctaacttcaagtagaatcaattcttaaggcaaaattaatt 27374396  T
Q  354 ctacttaaaagcaaccaaacacgtcagaatcaattctacacatccacatccagaatcaaatttagctcatctagaaatgaaatcaaac 441  Q
    |||||| ||| |||||||||| ||||||| |||||||   |||||| |  || | | ||||||||||| ||||||| |||||||||||    
T  27374397 ctacttgaaaacaaccaaacatgtcagaaacaattcttagcatccagaatca-atttaaatttagctcctctagaagtgaaatcaaac 27374483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 163 - 394
Target Start/End: Complemental strand, 29923069 - 29922833
Alignment:
Q  163 tgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccatacattc-ttcttgtaaaaatgag 261  Q
    ||||||||| |||| ||||| ||||||||||||| | |||| |||| ||||||| || |||| | || |||||  |||||||| ||| || |||||||||    
T  29923069 tgattttgaatgaattgattatgtaaaattgattttgactataagtgagttgaatgtgaagtaatttatgtttggatacattcattcatgcaaaaatgag 29922970  T
Q  262 ttgaactataaatttctt--taaaaatcaattctagaatc-aaaagctacaaatcatagcttcaagttgaa-tcaattcttgagccaaaaccagttctac 357  Q
    || ||  |||||||      |||||||||||||||||| | ||||||||| | |  |||||||||||| || |||||||||||| ||||| || |||| |    
T  29922969 ttaaaaaataaattcaaagataaaaatcaattctagaagccaaaagctacgatttttagcttcaagttaaaatcaattcttgagacaaaatcaattctgc 29922870  T
Q  358 ttaaaagcaaccaaacacgtcagaatcaattctacac 394  Q
    |  | | |||||||||| |||| ||||||||||||||    
T  29922869 tcgagaacaaccaaacatgtcaaaatcaattctacac 29922833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 359
Target Start/End: Complemental strand, 33608608 - 33608477
Alignment:
Q  231 tgtttccatacattcttcttgtaaaaatgagttgaactataaattt--ctttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtt-g 327  Q
    ||||| |||||||| ||| ||||||| ||||||||||||| |||||  || |||||||| |||||||||| |||| || ||| |  |||||||||||| |    
T  33608608 tgttttcatacattattcatgtaaaagtgagttgaactatgaatttaactgtaaaaatccattctagaatgaaaaactccaacttctagcttcaagttag 33608509  T
Q  328 aatcaattcttgagccaaaaccagttctactt 359  Q
    ||||||||||  || |||||||| ||||||||    
T  33608508 aatcaattctcaaggcaaaaccaattctactt 33608477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 335
Target Start/End: Original strand, 6951257 - 6951392
Alignment:
Q  199 aactaaaagtaagttgaaagtaaagtgacttgtgtttccatacattcttcttgtaaaaatgagttgaactataaatttcttt--aaaaatcaattctaga 296  Q
    |||||||||| ||| ||||||||| |||||||| |||  ||| |||| |   |||||| ||| ||||| ||||||||| | |  | ||||||||| ||||    
T  6951257 aactaaaagtgagtcgaaagtaaaatgacttgtatttggataaattcat---gtaaaagtgaattgaattataaatttatgtgtacaaatcaattataga 6951353  T
Q  297 atcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    ||||||||||||||||| || |||||||| |||||||||    
T  6951354 atcaaaagctacaaatcctaacttcaagtagaatcaatt 6951392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 397
Target Start/End: Original strand, 34250363 - 34250500
Alignment:
Q  260 agttgaactataaatttctttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctactt 359  Q
    |||||||| | |||||| | | |||| ||||| |||||||||||||||||| |  |||| |||||| ||||||||||| ||| || || || |||||||     
T  34250363 agttgaacaaaaaatttgtgtgaaaaacaattgtagaatcaaaagctacaatttctagcatcaagtagaatcaattctagaggcataatcaattctactc 34250462  T
Q  360 aaaagcaaccaaacacgtcagaatcaattctacacatc 397  Q
     | || ||||||||| |||| || ||||||||||||||    
T  34250463 tagagaaaccaaacatgtcaaaaacaattctacacatc 34250500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 38845494 - 38845441
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    |||||||||||||||||||||| ||||||||| ||||||||||| |||||||||    
T  38845494 aaaatcaattctagaatcaaaaactacaaatcttagcttcaagtagaatcaatt 38845441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 250 - 335
Target Start/End: Complemental strand, 31906344 - 31906257
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttctttaaaaat--caattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    ||||||| ||||||||||||||||||| | | |||||  ||||| || ||||||||| ||||||||||||||||||||  ||||||||    
T  31906344 tgtaaaagtgagttgaactataaatttatatgaaaatatcaattatataatcaaaagttacaaatcatagcttcaagtaaaatcaatt 31906257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 35108435 - 35108336
Alignment:
Q  136 tatggttggttttgtggtcacaaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgttt 235  Q
    |||| ||||||||| | | | ||||||| |||||||||||| | ||| ||||||||||||| ||| ||||| | |||||||| |||||||| ||||||||    
T  35108435 tatgtttggttttgcgatgaaaaaaatttattttgagtgaattaattctgtaaaattgattttaaataaaaattagttgaaaataaagtgatttgtgttt 35108336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 258 - 338
Target Start/End: Original strand, 22572412 - 22572494
Alignment:
Q  258 tgagttgaactataaatttctttaaaaa--tcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattctt 338  Q
    |||||| |||||||||||| |||| |||  ||||||||| ||||||||||||||||||  |||||||||   |||||||||||    
T  22572412 tgagttaaactataaatttgtttataaaattcaattctataatcaaaagctacaaatcccagcttcaagaacaatcaattctt 22572494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 401
Target Start/End: Complemental strand, 25548496 - 25548450
Alignment:
Q  355 tacttaaaagcaaccaaacacgtcagaatcaattctacacatccaca 401  Q
    ||||||||||||| |||||| |||| |||||||||||||||||||||    
T  25548496 tacttaaaagcaatcaaacatgtcataatcaattctacacatccaca 25548450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 117387 - 117471
Alignment:
Q  136 tatggttggttttgtggtcacaaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaa 222  Q
    |||| |||||| |||| | |||||||||||  ||||||||| ||||| ||||| ||||||||| |||| |||| ||||||| |||||    
T  117387 tatgtttggttctgtgttgacaaaaattga--ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaa 117471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 10859769 - 10859819
Alignment:
Q  185 gtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgttt 235  Q
    |||||||||||| ||||||||||||||||||| | ||||||| || |||||    
T  10859769 gtaaaattgattataactaaaagtaagttgaatgcaaagtgatttatgttt 10859819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 29793862 - 29793908
Alignment:
Q  141 ttggttttgtggtcacaaaaattgattttgagtgaaatgattgtgta 187  Q
    ||||||||||||| ||||| ||||||||||| |||||||||| ||||    
T  29793862 ttggttttgtggtaacaaatattgattttgaatgaaatgattctgta 29793908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 707700 - 707651
Alignment:
Q  157 aaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaa 206  Q
    |||||||||||||| ||||| ||||| ||||| |||||||| ||||||||    
T  707700 aaaaattgattttgcgtgaattgattatgtaagattgattccaactaaaa 707651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 11648133 - 11648080
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    |||||||||| || ||||||||  |||||||| ||||||||||| |||||||||    
T  11648133 aaaatcaattttataatcaaaatgtacaaatcttagcttcaagtagaatcaatt 11648080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 389
Target Start/End: Original strand, 15955447 - 15955484
Alignment:
Q  352 ttctacttaaaagcaaccaaacacgtcagaatcaattc 389  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  15955447 ttctactaaaaagcaaccaaacatgtcagaatcaattc 15955484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 12588023 - 12588071
Alignment:
Q  157 aaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaa 205  Q
    ||||||||||||||||| || | ||| ||||||||||||||||| ||||    
T  12588023 aaaaattgattttgagttaattaattatgtaaaattgattctaagtaaa 12588071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 388
Target Start/End: Complemental strand, 32980596 - 32980489
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtca 379  Q
    ||||||||| || |||||||||||| || ||||| || ||||||||  ||||||||||  || ||||| || ||||||| |||| |||| ||||| || |    
T  32980596 taaaaatcatttgtagaatcaaaagatataaatcttaacttcaagtaaaatcaattctgcag-caaaatcacttctactaaaaaacaacaaaacatgtta 32980498  T
Q  380 gaatcaatt 388  Q
     ||||||||    
T  32980497 aaatcaatt 32980489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 42724626 - 42724594
Alignment:
Q  184 tgtaaaattgattctaactaaaagtaagttgaa 216  Q
    |||||||||||||||||| ||||||||||||||    
T  42724626 tgtaaaattgattctaacaaaaagtaagttgaa 42724594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 7e-32; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 136 - 393
Target Start/End: Complemental strand, 40491774 - 40491518
Alignment:
Q  136 tatggttggttttgtggtcacaaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgttt 235  Q
    |||| |||||| || ||| |||| ||||||||||||||||| ||||| ||||||||||||| | ||||||||| ||||||| ||||||||| || | |||    
T  40491774 tatgtttggttctgcggtgacaagaattgattttgagtgaattgattctgtaaaattgattttgactaaaagtgagttgaaggtaaagtgatttattttt 40491675  T
Q  236 ccatacattcttcttgtaaaaatgagttgaactataaatt--tctttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaa 333  Q
      |||||   ||| ||||||| |||||| |||| ||||||  | | ||||| |||||||||||||||||||||||||| | || |||||||| || ||||    
T  40491674 ggataca---ttcatgtaaaagtgagttaaactttaaatttgtgtgtaaaagtcaattctagaatcaaaagctacaaaacttaacttcaagtagagtcaa 40491578  T
Q  334 ttcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcagaatcaattctaca 393  Q
    ||||  || ||||| || || |  |  ||||||||||| || || |||||||||||||||    
T  40491577 ttctgaaggcaaaatcaattatcttcgaaagcaaccaaccatgttagaatcaattctaca 40491518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 388
Target Start/End: Original strand, 41386818 - 41386955
Alignment:
Q  253 aaaaatgagttgaactataaatttcttt--aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaacca 350  Q
    |||| ||||||||| ||||||||| | |  ||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||  ||   ||| ||    
T  41386818 aaaagtgagttgaattataaatttgtgtgtaaatatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattctgaaggtgaaatca 41386917  T
Q  351 gttctacttaaaagcaaccaaacacgtcagaatcaatt 388  Q
     || ||||  ||||||| |||||| |||||||||||||    
T  41386918 attatactcgaaagcaatcaaacatgtcagaatcaatt 41386955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 309
Target Start/End: Complemental strand, 45557508 - 45557389
Alignment:
Q  189 aattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccatacattcttcttgtaaaaatgagttgaactataaatttcttt--aaaaat 286  Q
    |||||||||| ||||||||| ||||||| ||||||||| ||||||||  |||||||| |   |||||| |||||||| ||| |||||| | |  ||||||    
T  45557508 aattgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggatacattcat---gtaaaagtgagttgagctacaaatttgtgtgtaaaaat 45557412  T
Q  287 caattctagaatcaaaagctaca 309  Q
    |||| ||||||| ||||||||||    
T  45557411 caatcctagaattaaaagctaca 45557389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 337
Target Start/End: Complemental strand, 17111896 - 17111853
Alignment:
Q  294 agaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  17111896 agaatcaaaagctacaaatcatagcttcaagtagaatcaattct 17111853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 394
Target Start/End: Complemental strand, 27571913 - 27571801
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcaga 381  Q
    ||||||||||||||||||||||||| ||| |  || |||||||| |||||||||||||||  |||| || || ||||  | ||||| |||||| ||  ||    
T  27571913 aaaatcaattctagaatcaaaagctccaatttctaacttcaagtagaatcaattcttgaggtaaaatcaattatactcgagagcaatcaaacatgtagga 27571814  T
Q  382 atcaattctacac 394  Q
     ||||||||||||    
T  27571813 gtcaattctacac 27571801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 30182328 - 30182383
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    ||||||| ||||||||||||||||||||||| |  ||||||||||| |||||||||    
T  30182328 taaaaattaattctagaatcaaaagctacaatttttagcttcaagtagaatcaatt 30182383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 337
Target Start/End: Original strand, 38123666 - 38123755
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttc--tttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    ||||||| |||||||| | ||||||||   | ||||||||||||||||||| | ||||||||| |  ||||||||||| |||||||||||    
T  38123666 tgtaaaagtgagttgaccaataaatttgagtgtaaaaatcaattctagaattagaagctacaatttctagcttcaagtagaatcaattct 38123755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 22195915 - 22195862
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    |||||||||| |||||||||||| ||||||||||||||| ||||  ||||||||    
T  22195915 aaaatcaattttagaatcaaaagttacaaatcatagcttaaagtaaaatcaatt 22195862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 368
Target Start/End: Complemental strand, 40422828 - 40422757
Alignment:
Q  298 tcaaaagctacaaatcatagcttcaagtt-gaatcaattcttgagccaaaaccagttctacttaaaagcaac 368  Q
    |||||||| ||||||| || ||||||||| ||||||||||||||| ||||| || |||||||| | ||||||    
T  40422828 tcaaaagccacaaatcctaacttcaagttagaatcaattcttgaggcaaaatcaattctacttgagagcaac 40422757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 388
Target Start/End: Original strand, 5489880 - 5489986
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcaga 381  Q
    |||||||||| || ||||||||||| ||| |  |||| |||||| ||||||||| | ||| |||||  | ||||||| |  |||||||||||| || |||    
T  5489880 aaaatcaattatataatcaaaagctccaatttctagcatcaagtagaatcaattttggaggcaaaattaattctactcaggagcaaccaaacatgtaaga 5489979  T
Q  382 atcaatt 388  Q
    |||||||    
T  5489980 atcaatt 5489986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 28725088 - 28725138
Alignment:
Q  284 aatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaat 334  Q
    |||||||| ||||||||||||||||||||  |||||||||||  |||||||    
T  28725088 aatcaattatagaatcaaaagctacaaattctagcttcaagtataatcaat 28725138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 391
Target Start/End: Complemental strand, 41788367 - 41788260
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcaga 381  Q
    |||||||||| |||| ||||||| | ||| |  |||||| |||| |||||||||||||||  | || || ||||||| || |||||||||||| | || |    
T  41788367 aaaatcaattatagactcaaaagtttcaatttctagctttaagtagaatcaattcttgag--acaatcatttctactcaagagcaaccaaacatgccaaa 41788270  T
Q  382 atcaattcta 391  Q
    ||||||||||    
T  41788269 atcaattcta 41788260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 42481803 - 42481865
Alignment:
Q  160 aattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaa 222  Q
    |||||||||| |||||| ||||| ||||||||||||||| |  |||||| ||||||| |||||    
T  42481803 aattgattttaagtgaattgattatgtaaaattgattctgaaaaaaagtgagttgaatgtaaa 42481865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 392
Target Start/End: Original strand, 44856843 - 44856948
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcaga 381  Q
    ||||||||||||||||||||| | || ||||||||  ||||||| | ||||||| | |||  |||| || ||||||||   |||||||||| | |||| |    
T  44856843 aaaatcaattctagaatcaaatgttataaatcata--ttcaagtagtatcaattttggagggaaaatcaattctactt---agcaaccaaatatgtcata 44856937  T
Q  382 atcaattctac 392  Q
    |||||||||||    
T  44856938 atcaattctac 44856948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 337
Target Start/End: Complemental strand, 45997770 - 45997683
Alignment:
Q  253 aaaaatgagttgaactataaattt---ctttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    ||||| ||||||||||||||||||    | ||||||| |||| ||||||||||||||| |||||| ||  | ||||||||| ||||||    
T  45997770 aaaaaagagttgaactataaatttgtgttgtaaaaataaattatagaatcaaaagctataaatcacagtcttaagttgaataaattct 45997683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 26984533 - 26984569
Alignment:
Q  301 aaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  26984533 aaagctacaaatcttagcttcaagtagaatcaattct 26984569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 44365541 - 44365581
Alignment:
Q  186 taaaattgattctaactaaaagtaagttgaaagtaaagtga 226  Q
    |||||||||||| |||||||||||| ||||| |||||||||    
T  44365541 taaaattgattccaactaaaagtaaattgaaggtaaagtga 44365581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 323
Target Start/End: Original strand, 45821725 - 45821753
Alignment:
Q  295 gaatcaaaagctacaaatcatagcttcaa 323  Q
    |||||||||||||||||||||||||||||    
T  45821725 gaatcaaaagctacaaatcatagcttcaa 45821753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 7e-32; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 136 - 325
Target Start/End: Complemental strand, 7524309 - 7524121
Alignment:
Q  136 tatggttggttttgtggtcacaaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgttt 235  Q
    |||| |||||| |||||| |||| ||||||||||| ||||| ||||| | ||||||||||||||||||||||| || | || ||||||||| ||||||||    
T  7524309 tatgtttggttctgtggtgacaataattgattttgggtgaactgattctataaaattgattctaactaaaagtgagctcaaggtaaagtgatttgtgttt 7524210  T
Q  236 ccatacattcttcttgtaaaaatgagttgaactataaatt--tctttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagt 325  Q
      | |||   ||  ||||||| ||||||||||||||||||  | | ||||||||||||||| |||||||||||||||||| || ||||||||    
T  7524209 ggacaca---tttatgtaaaagtgagttgaactataaatttgtgtgtaaaaatcaattctataatcaaaagctacaaatcctaacttcaagt 7524121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 252 - 332
Target Start/End: Complemental strand, 30557585 - 30557505
Alignment:
Q  252 taaaaatgagttgaactataaatttctttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatca 332  Q
    ||||| ||||||||||||||||||| | | |||||||||||||||||||||| ||||||||| ||||||||| | ||||||    
T  30557585 taaaagtgagttgaactataaatttgtgtgaaaatcaattctagaatcaaaaactacaaatcctagcttcaactagaatca 30557505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 389
Target Start/End: Complemental strand, 1514428 - 1514288
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttcttt--aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaa 347  Q
    |||||||||||||||||| |||||||| | |  ||||||||||| || ||| |||||||||||||| ||||||||||| |||| |||| | ||| || ||    
T  1514428 tgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaatcctagcttcaagtagaataaattttggagacagaa 1514329  T
Q  348 ccagttctacttaaaagcaaccaaacacgtcagaatcaattc 389  Q
     ||||| ||| | | |||||||||||| |||||||| |||||    
T  1514328 tcagttttac-tgacagcaaccaaacatgtcagaattaattc 1514288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 394
Target Start/End: Original strand, 28083920 - 28084034
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtca 379  Q
    ||||||| |||| ||||||||||||||||||||  ||||||||||| |||||||||    || ||||| || |||||||  ||| |||||||| | ||||    
T  28083920 taaaaattaattatagaatcaaaagctacaaattctagcttcaagtagaatcaattacgaagacaaaatcaattctactcgaaaacaaccaaatatgtca 28084019  T
Q  380 gaatcaattctacac 394  Q
    |||||||||||||||    
T  28084020 gaatcaattctacac 28084034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 250 - 388
Target Start/End: Complemental strand, 6021889 - 6021749
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttc--tttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaa 347  Q
    ||||||| |||||||||| ||||| ||   | |||||||| ||| ||||||||||||||||| ||| ||||||||||| ||||| ||||| ||| |||||    
T  6021889 tgtaaaagtgagttgaaccataaacttgagtgtaaaaatctattatagaatcaaaagctacatatcctagcttcaagtagaatcgattctagaggcaaaa 6021790  T
Q  348 ccagttctacttaaaagcaaccaaacacgtcagaatcaatt 388  Q
     || |||||||| ||| ||| |||||  |||| ||||||||    
T  6021789 tcaattctacttgaaatcaatcaaacttgtcaaaatcaatt 6021749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 251 - 337
Target Start/End: Complemental strand, 11049334 - 11049246
Alignment:
Q  251 gtaaaaatgagttgaactataaatttcttt--aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    |||||| ||| ||||||||||||||| | |  ||||||||||| ||||||||||||||||||||| ||||||||||| ||||| |||||    
T  11049334 gtaaaagtgacttgaactataaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatcctagcttcaagtagaatcgattct 11049246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 250 - 335
Target Start/End: Original strand, 48549014 - 48549099
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttctttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    ||||||| |||||||||| ||||||   ||||||||||||||||||||||| ||||||||| |  ||||||||||| |||||||||    
T  48549014 tgtaaaagtgagttgaacaataaatgagtttaaaaatcaattctagaatcagaagctacaatttctagcttcaagtagaatcaatt 48549099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 397
Target Start/End: Original strand, 31362237 - 31362350
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtca 379  Q
    |||||||||||||||||||||||||||||||||  || |||||    ||||||||| | ||| ||||| || |||||| | |||||||||||||| || |    
T  31362237 taaaaatcaattctagaatcaaaagctacaaattctaacttca----gaatcaattatggaggcaaaatcaattctacatgaaagcaaccaaacatgtta 31362332  T
Q  380 gaatcaattctacacatc 397  Q
    || || ||||||||||||    
T  31362333 gagtcgattctacacatc 31362350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 157 - 337
Target Start/End: Original strand, 11817227 - 11817405
Alignment:
Q  157 aaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccatacattcttcttgtaaaa 256  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||||||||||  |||||||  |||| ||| || | |||  |||||   ||  |||||||    
T  11817227 aaaaattgagtttgagtgaattgattttgtaaaattgattctaactaaaagcgagttgaagataaaatgatttttatttgaataca---ttaatgtaaaa 11817323  T
Q  257 atgagttgaactataaatttct-ttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
     | ||||||||||||||||| | | ||||||||||| || ||||||  ||| |||||| | |||| |||| || ||||||||    
T  11817324 gttagttgaactataaatttgtgtaaaaaatcaattttaaaatcaatggctgcaaatctttgctttaagtagattcaattct 11817405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 282 - 399
Target Start/End: Original strand, 47892422 - 47892539
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcaga 381  Q
    ||||||||||||||||||||||||| ||| |  |||||| |||| |||||| |||| |    |||| || ||||||| ||||||||||||||| | | ||    
T  47892422 aaaatcaattctagaatcaaaagcttcaatttctagctttaagtagaatcagttctaggtgaaaaatcaattctactcaaaagcaaccaaacatgacgga 47892521  T
Q  382 atcaattctacacatcca 399  Q
    ||||||||||||| ||||    
T  47892522 atcaattctacacttcca 47892539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 252 - 337
Target Start/End: Original strand, 7790644 - 7790731
Alignment:
Q  252 taaaaatgagttgaactataaatttcttt--aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    ||||| |||||||||| |||||||| | |  ||||||||||| ||||||| ||| |||||||||||| |||||||| |||||||||||    
T  7790644 taaaagtgagttgaacaataaatttgtgtgtaaaaatcaattatagaatctaaatctacaaatcataacttcaagtagaatcaattct 7790731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 47899430 - 47899371
Alignment:
Q  155 acaaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttg 214  Q
    |||| ||||||||||||||||| ||||| ||||||||||||||| ||||||||| |||||    
T  47899430 acaagaattgattttgagtgaattgattttgtaaaattgattcttactaaaagtgagttg 47899371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 51500866 - 51500911
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagt 325  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||    
T  51500866 taaaaatcaattctagaatcaaaagctacaaatcctaggttcaagt 51500911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 337
Target Start/End: Original strand, 28287370 - 28287425
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    ||||||||||||| |||||||||||||||||| | ||||||||| ||| |||||||    
T  28287370 aaaatcaattctaaaatcaaaagctacaaatccttgcttcaagtagaaccaattct 28287425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 332
Target Start/End: Original strand, 30850386 - 30850483
Alignment:
Q  238 atacattc-ttcttgtaaaaatgagttgaactataaatttcttta--aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatca 332  Q
    |||||||| ||| ||||||| ||||||||||||||||||| | |   ||||||||||||| ||| |||| ||||||||| ||| ||||||| ||||||    
T  30850386 atacattcattcatgtaaaagtgagttgaactataaatttgtatgttaaaatcaattctaaaattaaaaactacaaatcctagtttcaagtagaatca 30850483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 401
Target Start/End: Original strand, 47321907 - 47322059
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttcttta--aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaa 347  Q
    ||||||| ||| ||||||||||||||| | ||  ||||||||||||||||| |||| || |||||  |||||||||||  |||||||| | ||  || ||    
T  47321907 tgtaaaagtgaattgaactataaatttgtgtatgaaaatcaattctagaattaaaa-ctgcaaattctagcttcaagtataatcaattatagaagcagaa 47322005  T
Q  348 ccagttctacttaaaagcaaccaaacacgtcagaatcaattctacacatccaca 401  Q
     || |||||||  | | |||| ||||| |||| |||||||||||||| ||||||    
T  47322006 tcaattctactcgacaacaacaaaacatgtcaaaatcaattctacacctccaca 47322059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 27849192 - 27849147
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagt 325  Q
    |||||||||||||||| ||||||||||||| ||| |||||||||||    
T  27849192 taaaaatcaattctagtatcaaaagctacacatcgtagcttcaagt 27849147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 335
Target Start/End: Complemental strand, 3016247 - 3016160
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttcttt--aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    ||||||| ||||||||||  ||||||| | |  ||| ||||||||||||||||||||||||||||  ||  ||||||| |||||||||    
T  3016247 tgtaaaagtgagttgaaccgtaaatttatgtgtaaacatcaattctagaatcaaaagctacaaattctaagttcaagtagaatcaatt 3016160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 22548188 - 22548248
Alignment:
Q  136 tatggttggttttgtggtcacaaaaattgattttgagtgaaatgattgtgtaaaattgatt 196  Q
    |||| ||||||||| ||| | ||||||||||||| |||||| ||||| |||||||||||||    
T  22548188 tatgtttggttttgcggtgataaaaattgattttaagtgaattgattttgtaaaattgatt 22548248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 310
Target Start/End: Original strand, 213537 - 213599
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttc--tttaaaaatcaattctagaatcaaaagctacaa 310  Q
    ||||||| |||||||||| | ||||||   |||||||||||||||||||||||||||| ||||    
T  213537 tgtaaaagtgagttgaacaacaaatttgagtttaaaaatcaattctagaatcaaaagccacaa 213599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 3515871 - 3515820
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatc 331  Q
    ||||||||||||||||||| ||||||||||| |  ||||||||||| |||||    
T  3515871 taaaaatcaattctagaatgaaaagctacaatttctagcttcaagtagaatc 3515820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 10324970 - 10325037
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaa 347  Q
    |||||||||||| |||||||||||||||||| |  || |||||||| || |||||||| ||| |||||    
T  10324970 taaaaatcaattatagaatcaaaagctacaatttctatcttcaagtagactcaattctagaggcaaaa 10325037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 323
Target Start/End: Complemental strand, 34915115 - 34915076
Alignment:
Q  284 aatcaattctagaatcaaaagctacaaatcatagcttcaa 323  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  34915115 aatcaattctagaatcaaaagctacaaagaatagcttcaa 34915076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 40643069 - 40642994
Alignment:
Q  160 aattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgttt 235  Q
    ||||||||||||||||| ||||| ||||||||||||| |   ||| || |||||||| ||||||||| || |||||    
T  40643069 aattgattttgagtgaattgattctgtaaaattgattttggataagagcaagttgaatgtaaagtgatttatgttt 40642994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 326
Target Start/End: Complemental strand, 33693074 - 33693028
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtt 326  Q
    |||||||||||| |||||||||||||||||| |  ||||||||||||    
T  33693074 taaaaatcaattatagaatcaaaagctacaatttctagcttcaagtt 33693028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 336
Target Start/End: Complemental strand, 47554027 - 47553934
Alignment:
Q  246 ttcttgtaaaaatgagttgaactataaatttcttt--aaaaatcaattctagaatcaaaag-ctacaaatcatagcttcaagttgaatcaattc 336  Q
    ||||| ||||||||||||||||||||||| | | |  |||||  ||||||||||| ||||  ||||||| ||||||||||| | ||||||||||    
T  47554027 ttcttataaaaatgagttgaactataaatgtatatgtaaaaactaattctagaataaaaaaactacaaagcatagcttcaaatagaatcaattc 47553934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 5268393 - 5268316
Alignment:
Q  159 aaattgattttgag-tgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgttt 235  Q
    |||||||||||||  |||| ||||  |||||||||||||||  |||||||| ||||||| ||||||||| || |||||    
T  5268393 aaattgattttgaaatgaactgatcttgtaaaattgattctgcctaaaagtgagttgaatgtaaagtgatttttgttt 5268316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 394
Target Start/End: Complemental strand, 24587949 - 24587848
Alignment:
Q  294 agaatcaaaagctacaa-atcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcagaatcaattctac 392  Q
    ||||||||||||| ||| |||  | |||||||| |||||| |||| | | ||||  || ||||||| || |||||||||||| |||| ||||||||||||    
T  24587949 agaatcaaaagctccaatatctaaacttcaagtagaatcagttctggcgtcaaagtcaattctactcaagagcaaccaaacatgtcacaatcaattctac 24587850  T
Q  393 ac 394  Q
    ||    
T  24587849 ac 24587848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 3515979 - 3515895
Alignment:
Q  160 aattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccatacatt 244  Q
    ||||| ||||||||||| ||||| |||||||||||||||    |||| | ||||||| || |||||| ||||||||  |||||||    
T  3515979 aattggttttgagtgaattgattatgtaaaattgattctggtgaaaattgagttgaaggtgaagtgatttgtgtttggatacatt 3515895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 308
Target Start/End: Original strand, 15084627 - 15084655
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctac 308  Q
    |||||||||||||||||||||||||||||    
T  15084627 taaaaatcaattctagaatcaaaagctac 15084655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 310
Target Start/End: Original strand, 26373575 - 26373603
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaa 310  Q
    |||||||||||||||||||||||||||||    
T  26373575 aaaatcaattctagaatcaaaagctacaa 26373603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 32369944 - 32369980
Alignment:
Q  160 aattgattttgagtgaaatgattgtgtaaaattgatt 196  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  32369944 aattgattttgagtgaattgattgtgtagaattgatt 32369980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 388
Target Start/End: Original strand, 37522942 - 37523050
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtca 379  Q
    |||||||||||||||| || |||| || ||| |  ||||||||||| ||||||||||  |||  |||| || |||||||  | ||||| |||||| ||||    
T  37522942 taaaaatcaattctaggataaaaaactccaacttctagcttcaagtagaatcaattcgagagaaaaaatcaattctactccagagcaatcaaacatgtca 37523041  T
Q  380 gaatcaatt 388  Q
     ||||||||    
T  37523042 taatcaatt 37523050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 45557477 - 45557437
Alignment:
Q  156 caaaaattgattttgagtgaaatgattgtgtaaaattgatt 196  Q
    |||||||||||||||| | || |||||||||||||||||||    
T  45557477 caaaaattgattttgaataaattgattgtgtaaaattgatt 45557437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 337
Target Start/End: Complemental strand, 50571332 - 50571280
Alignment:
Q  285 atcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    |||| ||||||||| |||| ||||||||| || |||||||| |||||||||||    
T  50571332 atcagttctagaataaaaaactacaaatcctaacttcaagtagaatcaattct 50571280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 153 - 306
Target Start/End: Original strand, 35264317 - 35264469
Alignment:
Q  153 tcacaaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccatacattcttcttgt 252  Q
    |||||| ||||||||||||||||| ||||| ||||||||||||| |||| |||||| ||||||||||||||||| || |||||   ||||   ||| |||    
T  35264317 tcacaataattgattttgagtgaattgattctgtaaaattgattgtaaccaaaagtgagttgaaagtaaagtgagttatgtttgggtaca---ttcatgt 35264413  T
Q  253 aaaaatgagttgaactataaattt--ctttaaaaatcaattctagaatcaaaagct 306  Q
    |||||||| |||||| ||||||||   | | |||||||||||||||||||||||||    
T  35264414 aaaaatgacttgaacaataaatttaagtgttaaaatcaattctagaatcaaaagct 35264469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 155 - 391
Target Start/End: Original strand, 32523242 - 32523484
Alignment:
Q  155 acaaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccatacattc---ttcttg 251  Q
    |||| ||||||||||  ||||| |||||  |||||||||||| | | ||||||| |||||||  |||||||| ||||||||  || |||||   ||| ||    
T  32523242 acaagaattgattttaggtgaattgattaggtaaaattgattttgattaaaagttagttgaagataaagtgatttgtgtttggatgcattcatgttcatg 32523341  T
Q  252 taaaaatgagttgaactataaatt--tctttaaaaatcaattctagaatcaaaagctacaaatcatagctt-caagttgaatcaattcttgagccaaaac 348  Q
    || || |||||| |||| ||||||  | | |||||||||||| ||||||||||||||||||||| || ||| ||||| |||  |||| | ||| |||||     
T  32523342 tataagtgagttaaactctaaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatcctaacttccaagtagaaataattatggaggcaaaat 32523441  T
Q  349 cagttctacttaaaagcaaccaaacacgtcagaatcaattcta 391  Q
    |  || ||||  |||||||||||||| ||| ||||||||||||    
T  32523442 ctattttactcgaaagcaaccaaacaagtctgaatcaattcta 32523484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 337
Target Start/End: Complemental strand, 52364136 - 52364047
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttct--ttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    ||||||| ||||||||||| ||||||| |  || |||||||||| ||||||||||||||| ||||||||||||||||| ||| |||||||    
T  52364136 tgtaaaagtgagttgaactgtaaatttatgtttgaaaatcaattatagaatcaaaagctataaatcatagcttcaagtagaaacaattct 52364047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 291 - 394
Target Start/End: Original strand, 1441424 - 1441527
Alignment:
Q  291 tctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcagaatcaattct 390  Q
    ||||||||||||||||||||||| ||| ||||||| || || ||| | ||| ||||| || ||||||| ||||| ||||||||| |||| | ||||||||    
T  1441424 tctagaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagaaaccaaacatgtcaaactcaattct 1441523  T
Q  391 acac 394  Q
    ||||    
T  1441524 acac 1441527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 280 - 394
Target Start/End: Complemental strand, 44771747 - 44771633
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtca 379  Q
    |||||||||||| ||||||||||||||||||||  ||| || | || ||||||||||  ||| |||||||| |||||| | | |||| || |||| ||||    
T  44771747 taaaaatcaattttagaatcaaaagctacaaattctagatttaggtagaatcaattccggaggcaaaaccaattctacctgatagcagcccaacatgtca 44771648  T
Q  380 gaatcaattctacac 394  Q
    |||||| ||||||||    
T  44771647 gaatcagttctacac 44771633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 157 - 308
Target Start/End: Original strand, 37334944 - 37335094
Alignment:
Q  157 aaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccatacattcttcttgtaaaa 256  Q
    |||| |||||||| |||||| ||||| | ||||||||||||  ||||||| | ||||||| ||||||||| || ||| |  |||||   ||| | |||||    
T  37334944 aaaatttgattttaagtgaattgattatataaaattgattccgactaaaattgagttgaaggtaaagtgatttatgtctgaataca---ttcatataaaa 37335040  T
Q  257 atgagttgaactataaatt--tctttaaaaatcaattctagaatcaaaagctac 308  Q
    ||||||||||| || ||||    | |||||||||||||||||||||||||||||    
T  37335041 atgagttgaacaatgaattcaagtgtaaaaatcaattctagaatcaaaagctac 37335094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 42913229 - 42913178
Alignment:
Q  157 aaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagt 208  Q
    |||||||||||||||||||| ||||||| ||||||| |||||||||||||||    
T  42913229 aaaaattgattttgagtgaattgattgtataaaattaattctaactaaaagt 42913178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 1441328 - 1441405
Alignment:
Q  168 ttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccatacattc 245  Q
    ||||||||| | ||| |||||||||||||||  |||||||| ||||||| ||||||||| ||||||||  ||||||||    
T  1441328 ttgagtgaattaattttgtaaaattgattctgtctaaaagtgagttgaacgtaaagtgatttgtgtttagatacattc 1441405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 398
Target Start/End: Original strand, 50321835 - 50321908
Alignment:
Q  325 ttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcagaatcaattctacacatcc 398  Q
    ||||||||||||||||| |||||  | ||||||| |||| |||||||||| |||||||| ||||||||| ||||    
T  50321835 ttgaatcaattcttgagacaaaattaattctactaaaaaacaaccaaacatgtcagaattaattctacatatcc 50321908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 358
Target Start/End: Complemental strand, 35058412 - 35058336
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctact 358  Q
    |||||||||||||||||||||||||  || |  ||||| ||||| ||||||||||||||| ||||| || |||||||    
T  35058412 aaaatcaattctagaatcaaaagctcgaatttctagctccaagtagaatcaattcttgaggcaaaatcaattctact 35058336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 303
Target Start/End: Original strand, 43776263 - 43776369
Alignment:
Q  200 actaaaagtaagttgaaagtaaagtgacttgtgtttccatacattc-ttcttgtaaaaa-tgagttgaactataaatttc--tttaaaaatcaattctag 295  Q
    ||||||| ||| ||||||||||| ||| || |||||  |||||||| ||| |||||||| ||||||||||||||||||||   ||||||||||||| |||    
T  43776263 actaaaaataaattgaaagtaaattga-ttatgtttgtatacattcattcatgtaaaaactgagttgaactataaatttcagattaaaaatcaattatag 43776361  T
Q  296 aatcaaaa 303  Q
    ||||||||    
T  43776362 aatcaaaa 43776369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 394
Target Start/End: Original strand, 44958640 - 44958752
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcaga 381  Q
    ||||||| ||||||||||||||||| ||| |  |||| || ||| ||||||| ||| ||| ||||| || |||  | | | |||||||||||| ||||||    
T  44958640 aaaatcatttctagaatcaaaagctccaatttctagcatcgagtagaatcaactctggaggcaaaatcaattccccctgagagcaaccaaacatgtcaga 44958739  T
Q  382 atcaattctacac 394  Q
    |||||||||||||    
T  44958740 atcaattctacac 44958752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 44958550 - 44958621
Alignment:
Q  155 acaaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtga 226  Q
    |||||||| || |||||||||| ||||  ||||||||||||| |  |||||||| |||||||||||||||||    
T  44958550 acaaaaatcgactttgagtgaattgatcatgtaaaattgattttggctaaaagtgagttgaaagtaaagtga 44958621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 337
Target Start/End: Original strand, 40147885 - 40147939
Alignment:
Q  283 aaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    |||||||||||||||||||||||| |||||  |||||| |||| |||||||||||    
T  40147885 aaatcaattctagaatcaaaagctccaaattctagcttgaagtagaatcaattct 40147939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 391
Target Start/End: Original strand, 41115395 - 41115505
Alignment:
Q  282 aaaatcaattctagaatc-aaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcag 380  Q
    |||||||||| ||||| | |||||||||||||  ||||||||||| |||||||||||  |  ||||| || |||||||| ||| || ||||||| ||||     
T  41115395 aaaatcaattgtagaagccaaaagctacaaattctagcttcaagtagaatcaattctacaagcaaaatcaattctactttaaaacatccaaacatgtcaa 41115494  T
Q  381 aatcaattcta 391  Q
    ||||| |||||    
T  41115495 aatcagttcta 41115505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 270 - 391
Target Start/End: Complemental strand, 5406969 - 5406848
Alignment:
Q  270 taaatttctttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaacc 369  Q
    ||||||| ||||||||||||||||| ||||| ||||||| | |  ||||||| ||| ||||| ||||| ||| ||||| || || ||||| | || ||||    
T  5406969 taaatttgtttaaaaatcaattctataatcagaagctaccatttctagcttcgagtagaatccattctagaggcaaaatcaattatactttagaggaacc 5406870  T
Q  370 aaacacgtcagaatcaattcta 391  Q
    ||||||   | |||||||||||    
T  5406869 aaacacagaaaaatcaattcta 5406848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 35058118 - 35058065
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    ||||||||||||| ||| |||||||||||||| |||||||| || |||||||||    
T  35058118 aaaatcaattctataattaaaagctacaaatcctagcttcatgtagaatcaatt 35058065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 321
Target Start/End: Original strand, 31708170 - 31708312
Alignment:
Q  178 tgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccatacattcttcttgtaaaaatgagttgaactataaatttc 277  Q
    ||||| |||||||||||||   ||||||||| |||||    |||||||  ||||||||  |||||||| |   |||||| ||||||||| |||||||||     
T  31708170 tgattttgtaaaattgattaggactaaaagtgagttgctgataaagtggtttgtgtttggatacattcat---gtaaaagtgagttgaattataaatttg 31708266  T
Q  278 ttta--aaaatcaattctagaatcaaaagctacaaatcatagcttc 321  Q
    | |   | |||||||||||||||||||||||||||||  |||||||    
T  31708267 tgtgttagaatcaattctagaatcaaaagctacaaatagtagcttc 31708312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 42375596 - 42375528
Alignment:
Q  262 ttgaactataaatttctttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaat 330  Q
    |||||| | |||||| | |||||||||||||||  |||||| ||||||||| |||||||||||| ||||    
T  42375596 ttgaacaaaaaatttgtataaaaatcaattctatgatcaaacgctacaaattatagcttcaagtagaat 42375528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 42404310 - 42404242
Alignment:
Q  262 ttgaactataaatttctttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaat 330  Q
    |||||| | |||||| | |||||||||||||||  |||||| ||||||||| |||||||||||| ||||    
T  42404310 ttgaacaaaaaatttgtataaaaatcaattctatgatcaaacgctacaaattatagcttcaagtagaat 42404242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 388
Target Start/End: Original strand, 47356277 - 47356385
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtca 379  Q
    ||||||||||||||| |||||||  ||| ||||| || |||||||| ||||| |||||  || ||||| || || ||||| | ||||||||||||  |||    
T  47356277 taaaaatcaattctataatcaaagactataaatcttaacttcaagtggaatcgattctaaagacaaaatcaattatacttgatagcaaccaaacatatca 47356376  T
Q  380 gaatcaatt 388  Q
     ||||||||    
T  47356377 taatcaatt 47356385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 31013190 - 31013115
Alignment:
Q  160 aattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgttt 235  Q
    ||||||||||||||||| |||||   ||||||||||||  ||||||||| ||||| |  |||||||| ||||||||    
T  31013190 aattgattttgagtgaattgattccataaaattgattccgactaaaagtgagttgtagataaagtgatttgtgttt 31013115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 52925554 - 52925601
Alignment:
Q  178 tgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtg 225  Q
    ||||| ||||||||||||||| ||||||| | ||||||||||||||||    
T  52925554 tgattttgtaaaattgattctcactaaaattgagttgaaagtaaagtg 52925601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 584712 - 584762
Alignment:
Q  166 ttttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaa 216  Q
    ||||||||||| ||||| ||||||||||||| || |||||| |||||||||    
T  584712 ttttgagtgaattgattttgtaaaattgattttagctaaaattaagttgaa 584762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 394
Target Start/End: Original strand, 3845147 - 3845258
Alignment:
Q  281 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcag 380  Q
    |||||||||||||||||||||||||| ||  |  ||| ||||||||  || |||||| ||| || || || |||||||| | | ||| |||||| ||||     
T  3845147 aaaaatcaattctagaatcaaaagctccagtttctagtttcaagtt--ataaattctagaggcagaatcaattctacttgagatcaaacaaacatgtcaa 3845244  T
Q  381 aatcaattctacac 394  Q
    ||||||||||||||    
T  3845245 aatcaattctacac 3845258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 12674679 - 12674720
Alignment:
Q  158 aaaattgattttgagtgaaatgattgtgtaaaattgattcta 199  Q
    ||||| ||||||||||||| |||||||||||| |||||||||    
T  12674679 aaaatagattttgagtgaattgattgtgtaaagttgattcta 12674720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 312
Target Start/End: Complemental strand, 31492817 - 31492788
Alignment:
Q  283 aaatcaattctagaatcaaaagctacaaat 312  Q
    ||||||||||||||||||||||||||||||    
T  31492817 aaatcaattctagaatcaaaagctacaaat 31492788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 32112167 - 32112130
Alignment:
Q  159 aaattgattttgagtgaaatgattgtgtaaaattgatt 196  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  32112167 aaattgattttgagtgaattgattatgtaaaattgatt 32112130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 44489692 - 44489651
Alignment:
Q  159 aaattgattttgagtgaaatgattgtgtaaaattgattctaa 200  Q
    |||||||||||||||||| ||||  |||||||||||||||||    
T  44489692 aaattgattttgagtgaattgataatgtaaaattgattctaa 44489651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 335
Target Start/End: Complemental strand, 4526217 - 4526130
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttcttt--aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    ||||||| || |||||||||||||||| | |  ||||||||||| || ||||||||| ||||||| |||| | ||| | |||||||||    
T  4526217 tgtaaaagtgtgttgaactataaatttgtgtgtaaaaatcaattttaaaatcaaaagttacaaattataggtacaaatagaatcaatt 4526130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 294 - 358
Target Start/End: Original strand, 7717367 - 7717431
Alignment:
Q  294 agaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctact 358  Q
    ||||||| ||||||||| |  ||||||||||| ||||||||||| ||| ||||| || |||||||    
T  7717367 agaatcagaagctacaatttctagcttcaagtagaatcaattctggaggcaaaatcaattctact 7717431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 30958209 - 30958145
Alignment:
Q  160 aattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagt 224  Q
    |||||||||||| |||| ||||| ||||||||||||| |  ||||| || ||||||| |||||||    
T  30958209 aattgattttgaatgaattgattttgtaaaattgattttggctaaatgtgagttgaatgtaaagt 30958145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 30974021 - 30973957
Alignment:
Q  160 aattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagt 224  Q
    |||||||||||| |||| ||||| ||||||||||||| |  ||||| || ||||||| |||||||    
T  30974021 aattgattttgaatgaattgattttgtaaaattgattttggctaaatgtgagttgaatgtaaagt 30973957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 337
Target Start/End: Complemental strand, 32112046 - 32111990
Alignment:
Q  282 aaaatcaattctagaatc-aaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    ||||||||||||| || | |||||||||||||  ||||||||||| |||||||||||    
T  32112046 aaaatcaattctaaaagccaaaagctacaaattgtagcttcaagtagaatcaattct 32111990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 337
Target Start/End: Complemental strand, 40339278 - 40339222
Alignment:
Q  282 aaaatcaattctagaatcaaaa-gctacaaatcatagcttcaagttgaatcaattct 337  Q
    |||||||||| ||||| ||||| |||||||||  ||||||||||| |||||||||||    
T  40339278 aaaatcaattgtagaagcaaaaagctacaaattgtagcttcaagtagaatcaattct 40339222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 40736580 - 40736624
Alignment:
Q  291 tctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    ||||||||||||||| |||||| |||| ||||||| |||||||||    
T  40736580 tctagaatcaaaagcgacaaattatagtttcaagtagaatcaatt 40736624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 42644379 - 42644303
Alignment:
Q  160 aattgattttgagtgaaatgattgtgt-aaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgttt 235  Q
    ||||||||||||||||| ||||| | | |||||||||| ||  ||||||| ||||||| ||||||||| || |||||    
T  42644379 aattgattttgagtgaattgattttataaaaattgattttagttaaaagtgagttgaatgtaaagtgatttatgttt 42644303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 335
Target Start/End: Complemental strand, 42913143 - 42913052
Alignment:
Q  246 ttcttgtaaaaatgagttgaactataaatttcttt--aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    ||||||||||||| ||||||| |||||| || |||  ||| |||||||||||||| ||||  || |||| ||| ||||||||  ||||||||    
T  42913143 ttcttgtaaaaataagttgaaatataaaattgtttgtaaagatcaattctagaataaaaaattataaattataacttcaagtataatcaatt 42913052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 394
Target Start/End: Complemental strand, 54596869 - 54596757
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcaga 381  Q
    ||||||||||||| ||| ||||| |||||||  || |||||| |  ||||| || | ||| || || || |||||||| ||| |||||||||| |||| |    
T  54596869 aaaatcaattctaaaattaaaagttacaaattctaacttcaaataaaatcatttttggaggcagaatcaattctacttgaaaacaaccaaacatgtcata 54596770  T
Q  382 atcaattctacac 394  Q
    ||||||| |||||    
T  54596769 atcaattttacac 54596757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 280 - 399
Target Start/End: Complemental strand, 35065116 - 35064997
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtca 379  Q
    |||||||||||||||||||||||||  ||||||  |||||||||||  |||||||| ||||| ||||| || |||||||  |||||||||||| | ||||    
T  35065116 taaaaatcaattctagaatcaaaagtcacaaatactagcttcaagtaaaatcaattattgaggcaaaatcaattctactcgaaagcaaccaaaaatgtca 35065017  T
Q  380 gaatcaattctacacatcca 399  Q
     |||||||||||||| ||||    
T  35065016 taatcaattctacacctcca 35064997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 250 - 372
Target Start/End: Original strand, 32818370 - 32818494
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttcttt--aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaa 347  Q
    ||||||| | ||||||||||||||||| | |  ||||||||||||||||||||||||||||||||  ||||||||| | ||||||||||| ||| |||||    
T  32818370 tgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaatagaatcaattctggaggcaaaa 32818469  T
Q  348 ccagttctacttaaaagcaaccaaa 372  Q
     || |||||||  |||| |||||||    
T  32818470 tcaattctactcgaaagaaaccaaa 32818494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 250 - 394
Target Start/End: Complemental strand, 16552040 - 16551896
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttctttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaacc 349  Q
    ||||||| ||||||||||||||||||| | | ||||||||||||||||  |||| ||||||||| ||||||||||  ||||| || || ||| || || |    
T  16552040 tgtaaaagtgagttgaactataaatttgtgtgaaaatcaattctagaactaaaaactacaaatcctagcttcaaggagaatccatcctagaggcagaatc 16551941  T
Q  350 agttctacttaaaagcaaccaaacacgtcagaatcaattctacac 394  Q
    || |||| |  | |||||||| ||| |||||||||||||||||||    
T  16551940 agctctattcgacagcaaccatacatgtcagaatcaattctacac 16551896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 282 - 394
Target Start/End: Complemental strand, 2635214 - 2635102
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcaga 381  Q
    ||||||||||||||| ||||||||| |||    ||||||||||   |||||||||| ||| ||||| ||||||||||||||||||| |||||| |||| |    
T  2635214 aaaatcaattctagactcaaaagctccaatctctagcttcaagcataatcaattctggaggcaaaatcagttctacttaaaagcaatcaaacatgtcaaa 2635115  T
Q  382 atcaattctacac 394  Q
    ||||||| |||||    
T  2635114 atcaattttacac 2635102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 43868311 - 43868224
Alignment:
Q  157 aaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccatacatt 244  Q
    ||||||||||||||| |||| ||||| ||||||||| ||||||  ||||||||||||||||||||||||| |||| |||  |||||||    
T  43868311 aaaaattgattttgaatgaattgattttgtaaaattaattctagttaaaagtaagttgaaagtaaagtgatttgtctttggatacatt 43868224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 21691212 - 21691302
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttcttta--aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattctt 338  Q
    ||||||| || |||||||||||||||| | |   ||||||||||||| || ||||||||||||||| ||| ||||||||||||||||||||    
T  21691212 tgtaaaagtgtgttgaactataaatttgtgtgtgaaaatcaattctacaaccaaaagctacaaatcttagtttcaagttgaatcaattctt 21691302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 250 - 399
Target Start/End: Original strand, 46344833 - 46344982
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttct-ttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaac 348  Q
    ||||||| ||||| ||||| ||||||| | |||||||||| ||| |||||||||||||  ||||  || |||||||| |||| |||| | ||| |||||     
T  46344833 tgtaaaagtgagtcgaactttaaatttgtgttaaaaatcacttccagaatcaaaagctggaaattctaacttcaagtagaat-aattatggaggcaaaat 46344931  T
Q  349 cagttctacttaaaagcaaccaaacacgtcagaatcaattctacacatcca 399  Q
    || || ||||| |||||||||||||| |||||||| |||| ||||| ||||    
T  46344932 caattatacttgaaagcaaccaaacatgtcagaattaattatacacctcca 46344982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 8604656 - 8604709
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||||||||    
T  8604656 aaaatcaattctagaatcgaaagctacaaatcttagcttcaagtagaatcaatt 8604709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 337
Target Start/End: Complemental strand, 14596742 - 14596685
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    |||||||||||||||||||||||| || |||| ||||||||||||| |||||||||||    
T  14596742 taaaaatcaattctagaatcaaaaactgcaaaacatagcttcaagtagaatcaattct 14596685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 24364086 - 24364167
Alignment:
Q  141 ttggttttgtggtcacaaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaa 222  Q
    |||||||| || | ||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||| | ||||| |||||    
T  24364086 ttggttttatgatgacaaaaattgattttgaatgaattgattatgtaaaattgattctcactaaaagtgatttgaatgtaaa 24364167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 337
Target Start/End: Complemental strand, 30357565 - 30357508
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    |||||||||||| || ||||||||||||||||||| |||||||||| |||||||||||    
T  30357565 taaaaatcaattatataatcaaaagctacaaatcacagcttcaagtagaatcaattct 30357508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 202 - 391
Target Start/End: Complemental strand, 25319178 - 25318989
Alignment:
Q  202 taaaagtaagttgaaagtaaagtgacttgtgtttccatacattcttcttgtaaaaatgagttgaactataaatttcttta---aaaatcaattctagaat 298  Q
    ||||||||||||||| |||||||   || |||||| ||||||| | |  |||||| |||||||||| |||||||||  ||   |||||||  | |||| |    
T  25319178 taaaagtaagttgaatgtaaagttttttatgtttcgatacatt-tac--gtaaaagtgagttgaacaataaatttcagtataaaaaatcacatttagact 25319082  T
Q  299 caaaagctacaaatcatagcttcaagtt-gaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcagaatcaattcta 391  Q
    |||| |||||||||| || ||||||||| ||||||||||| ||| ||||| || |||||||  | |||||||||||| |||| |||||||||||    
T  25319081 caaa-gctacaaatcctaccttcaagttagaatcaattctggagacaaaatcaattctactcgagagcaaccaaacatgtcaaaatcaattcta 25318989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 337
Target Start/End: Complemental strand, 9134681 - 9134606
Alignment:
Q  262 ttgaactataaatttctttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    |||| |||||||||| | | ||||||||||||| |||||||||||||||||  ||||||||||| | |||||||||    
T  9134681 ttgagctataaatttgtgtgaaaatcaattctaaaatcaaaagctacaaattttagcttcaagtaggatcaattct 9134606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 317
Target Start/End: Complemental strand, 33456457 - 33456390
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttctttaaaaatcaattctagaatcaaaagctacaaatcatag 317  Q
    ||||||| ||| |||||||||| |||| | | |||||||||| |||||||||||||||||||||||||    
T  33456457 tgtaaaagtgaattgaactatagatttatgtgaaaatcaattatagaatcaaaagctacaaatcatag 33456390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 278 - 387
Target Start/End: Original strand, 33560600 - 33560710
Alignment:
Q  278 tttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtt-gaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacg 376  Q
    ||||||||||| || |||| |||||||||||||||| ||||||   ||| ||||||||||| ||| ||||| || |||||||  | |||||||||||| |    
T  33560600 tttaaaaatcacttttagactcaaaagctacaaatcctagctttcggttagaatcaattctagaggcaaaatcaattctactcgagagcaaccaaacatg 33560699  T
Q  377 tcagaatcaat 387  Q
    ||| |||||||    
T  33560700 tcaaaatcaat 33560710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 374
Target Start/End: Original strand, 31012738 - 31012865
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttcttt---aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaa 346  Q
    ||||||||||||||||||||||||| | | |   |||||||||||||| ||| |||| ||||||||| ||| ||  ||| |||||||||||  |  ||||    
T  31012738 tgtaaaaatgagttgaactataaatatatgtgtgaaaaatcaattctaaaattaaaaactacaaatcctagttttgagtagaatcaattctgaaatcaaa 31012837  T
Q  347 accagttctacttaaaagcaaccaaaca 374  Q
    | ||||||||||  | ||||||||||||    
T  31012838 atcagttctactcgacagcaaccaaaca 31012865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 34155868 - 34155811
Alignment:
Q  157 aaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttg 214  Q
    |||||||| ||||||||||| | ||| ||||||||||||||||||||||||| |||||    
T  34155868 aaaaattgtttttgagtgaattaattatgtaaaattgattctaactaaaagtgagttg 34155811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 390
Target Start/End: Complemental strand, 22683949 - 22683806
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttc--tttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtt-gaatcaattcttgagccaaa 346  Q
    |||||||  ||||||||| |||||||||  | |||||||||  | |||| |||||||||||| ||||||||||||||||  ||| |||||| ||| ||||    
T  22683949 tgtaaaagcgagttgaacaataaatttcaatgtaaaaatcacgtttagactcaaaagctacagatcatagcttcaagttataattaattctggaggcaaa 22683850  T
Q  347 accagttctacttaaaagcaaccaaacacgtcagaatcaattct 390  Q
    | || || |||| |||| ||| | |||| |||| ||||||||||    
T  22683849 atcaattttactcaaaaacaaaccaacatgtcaaaatcaattct 22683806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 358
Target Start/End: Complemental strand, 26617550 - 26617443
Alignment:
Q  253 aaaaatgagttgaactataaattt--ctttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaacca 350  Q
    |||| ||||||||| |||||||||  || |||||||||||| || |||||||||||||| ||  ||||||||||| |||||| || | ||| ||||| ||    
T  26617550 aaaactgagttgaattataaatttatctataaaaatcaattttataatcaaaagctacagattctagcttcaagtagaatcatttttggaggcaaaatca 26617451  T
Q  351 gttctact 358  Q
     |||||||    
T  26617450 attctact 26617443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 50061662 - 50061738
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctact 358  Q
    |||||||| ||||||||||||| ||||||||| || |||||||| ||||||||| | ||| ||||| || |||||||    
T  50061662 aaaatcaactctagaatcaaaaactacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctact 50061738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 254 - 333
Target Start/End: Original strand, 41370016 - 41370095
Alignment:
Q  254 aaaatgagttgaactataaatttctttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaa 333  Q
    |||||||||||||||||||||||   | |||||||| |||||||| |||| ||| ||||| || |||||||| |||||||    
T  41370016 aaaatgagttgaactataaatttacgtcaaaatcaagtctagaataaaaaactataaatcctaacttcaagtagaatcaa 41370095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 16644031 - 16643981
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaat 330  Q
    |||||||||||||||||||||||| ||| |||| |||||||||||| ||||    
T  16644031 taaaaatcaattctagaatcaaaatctataaattatagcttcaagtagaat 16643981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 49138795 - 49138845
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaat 330  Q
    |||||||||||| |||||||||||| |||||||| ||||||||||| ||||    
T  49138795 taaaaatcaattttagaatcaaaagttacaaatcctagcttcaagtagaat 49138845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 340
Target Start/End: Original strand, 53713599 - 53713653
Alignment:
Q  286 tcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttga 340  Q
    |||||| ||||||||||||||||||||| |||||||||||  ||| |||||||||    
T  53713599 tcaattatagaatcaaaagctacaaatcgtagcttcaagtaaaattaattcttga 53713653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 388
Target Start/End: Original strand, 54705437 - 54705531
Alignment:
Q  295 gaatcaaaagctacaaatcatagcttcaagtt-gaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcagaatcaatt 388  Q
    ||||||||||||||||| | |||||||||||| | ||||||| ||||| ||||| || || |||||   |||||||||||| ||| |||||||||    
T  54705437 gaatcaaaagctacaaaccctagcttcaagttagtatcaattattgaggcaaaatcaattatacttgtgagcaaccaaacatgtctgaatcaatt 54705531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 284 - 337
Target Start/End: Complemental strand, 1616439 - 1616387
Alignment:
Q  284 aatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    |||||||||||||||||||||||||||||  |||||| |||| |||||||||||    
T  1616439 aatcaattctagaatcaaaagctacaaattgtagctt-aagtagaatcaattct 1616387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 9064282 - 9064229
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    |||||||||||||||||||||| ||||||||  ||| ||||||| |||||||||    
T  9064282 aaaatcaattctagaatcaaaaactacaaattctagtttcaagtagaatcaatt 9064229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 315 - 392
Target Start/End: Original strand, 48045768 - 48045845
Alignment:
Q  315 tagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcagaatcaattctac 392  Q
    ||||||||||| |||| |||||| | | |||||  |||| ||||| |||||||||||||| ||| |||||||||||||    
T  48045768 tagcttcaagtcgaataaattctggtggcaaaattagttttacttgaaagcaaccaaacatgtccgaatcaattctac 48045845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 337
Target Start/End: Complemental strand, 18597091 - 18597035
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagtt-gaatcaattct 337  Q
    |||||||||| |||||||||||| | ||||| ||||||||||||| |||||||||||    
T  18597091 aaaatcaattatagaatcaaaaggttcaaattatagcttcaagttagaatcaattct 18597035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 336
Target Start/End: Complemental strand, 30357700 - 30357644
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattc 336  Q
    ||||||| |||| || |||||||||||||| ||||||||||||| | ||||||||||    
T  30357700 taaaaataaattatataatcaaaagctacagatcatagcttcaattagaatcaattc 30357644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 337
Target Start/End: Original strand, 55186979 - 55187051
Alignment:
Q  265 aactataaatttctttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    |||||||||| | | | ||||||||||||| ||| ||||| |||||||| || |||||||| |||||||||||    
T  55186979 aactataaatatgtgtgaaaatcaattctataattaaaagttacaaatcctaacttcaagtagaatcaattct 55187051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 347
Target Start/End: Original strand, 11271582 - 11271637
Alignment:
Q  293 tagaatcaaaagctacaaatcatagcttcaagtt-gaatcaattcttgagccaaaa 347  Q
    |||| |||||||||||||||| |||||||||||| ||||||||||| ||| |||||    
T  11271582 tagactcaaaagctacaaatcctagcttcaagttagaatcaattctggaggcaaaa 11271637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 20911809 - 20911848
Alignment:
Q  157 aaaaattgattttgagtgaaatgattgtgtaaaattgatt 196  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  20911809 aaaaattgattttgagtgaattgattatgtaaaattgatt 20911848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 22250403 - 22250332
Alignment:
Q  155 acaaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtga 226  Q
    |||| ||||||||||||| ||| ||||| ||||||||||||| | ||||||||  ||||||| || ||||||    
T  22250403 acaacaattgattttgagggaattgattctgtaaaattgattatgactaaaagcgagttgaatgtgaagtga 22250332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 313
Target Start/End: Complemental strand, 45011925 - 45011894
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatc 313  Q
    ||||||||||||||||||||||||||||||||    
T  45011925 aaaatcaattctagaatcaaaagctacaaatc 45011894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 321
Target Start/End: Original strand, 42971906 - 42971975
Alignment:
Q  254 aaaatgagttgaactataaatttcttt--aaaaatcaattctagaatcaaaagctacaaatcatagcttc 321  Q
    ||||| ||||||||||||||||| | |  |||||||||||||| || ||||||||| |||| ||||||||    
T  42971906 aaaattagttgaactataaatttgtatgtaaaaatcaattctaaaagcaaaagctataaattatagcttc 42971975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 306
Target Start/End: Complemental strand, 4243561 - 4243414
Alignment:
Q  159 aaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtg-tttccatacattcttcttgtaaaaa 257  Q
    |||||||||||||||  |  |||| ||||||||||||||  |||||||||||| || | ||||||||| || || |||  | |||   ||  |||||||     
T  4243561 aaattgattttgagttgatagattatgtaaaattgattccgactaaaagtaagatgtaggtaaagtgatttttgttttggagaca---ttgatgtaaaag 4243465  T
Q  258 tgagttgaactataaattt--ctttaaaaatcaattctagaatcaaaagct 306  Q
    ||||| |||| ||||||||   | |||||||||||||||||||||||||||    
T  4243464 tgagtagaacaataaatttgagtgtaaaaatcaattctagaatcaaaagct 4243414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 23335268 - 23335305
Alignment:
Q  155 acaaaaattgattttgagtgaaatgattgtgtaaaatt 192  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  23335268 acaaaaattgattttgaatgaaatgattttgtaaaatt 23335305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 53158948 - 53159009
Alignment:
Q  136 tatggttggttttgtggtcacaaaaa-ttgattttgagtgaaatgattgtgtaaaattgatt 196  Q
    |||| ||||||||| ||| ||||||| ||||||||||||||| ||||  |||||||||||||    
T  53158948 tatgtttggttttgcggtgacaaaaagttgattttgagtgaattgatcatgtaaaattgatt 53159009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 2206571 - 2206503
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtt-gaatcaattcttgagccaaaa 347  Q
    |||||| ||||| ||||||||||||||||||    |||||||||||| ||||||||| | |||||||||    
T  2206571 taaaaaacaattatagaatcaaaagctacaatgtttagcttcaagttagaatcaattatggagccaaaa 2206503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 25405781 - 25405729
Alignment:
Q  141 ttggttttgtggtcacaaaaattgattttgagtgaaatgattgtgtaaaattg 193  Q
    |||||||||||||    ||||||||||||||||||| ||||| ||||||||||    
T  25405781 ttggttttgtggttgttaaaattgattttgagtgaattgattatgtaaaattg 25405729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 335
Target Start/End: Complemental strand, 25927390 - 25927306
Alignment:
Q  251 gtaaaaatgagttgaactataaatttctttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    |||||| ||| |||| | |||||||| | ||||||||||||||  ||||| |||||||||||| || || ||| | |||||||||    
T  25927390 gtaaaagtgaattgagccataaatttatgtaaaaatcaattctgaaatcataagctacaaatcttaactccaaatagaatcaatt 25927306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 356
Target Start/End: Complemental strand, 30889840 - 30889764
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttcta 356  Q
    ||||||||||||||| ||||||||  |||||||| ||  | ||||| ||||||||||| ||| ||||| || |||||    
T  30889840 taaaaatcaattctacaatcaaaatttacaaatcttaattgcaagtagaatcaattctagagacaaaatcaattcta 30889764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 337
Target Start/End: Original strand, 55927807 - 55927859
Alignment:
Q  285 atcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    |||||||||||||||| ||||||||| |  |||| |||||| |||||||||||    
T  55927807 atcaattctagaatcagaagctacaatttttagcctcaagtggaatcaattct 55927859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 189 - 399
Target Start/End: Complemental strand, 30503350 - 30503143
Alignment:
Q  189 aattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccatacattcttcttgtaaaaatgagttgaactataaatt--tctttaaaaat 286  Q
    |||||||||| ||||||||| ||||||| ||||| ||| || |||||  |||      || |||||||||||||| || | ||||||  | | |||||||    
T  30503350 aattgattctgactaaaagttagttgaaggtaaactgatttttgtttggataa-----tcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaat 30503256  T
Q  287 caattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcagaatcaa 386  Q
    ||||||| |||||||||||||| |||| | ||||||||| ||||||||| | ||| ||||| || |||| ||| ||| ||| | |||| || ||||||||    
T  30503255 caattcttgaatcaaaagctacgaatcctggcttcaagtagaatcaattttggaggcaaaatcatttcttcttgaaatcaatcgaacatgttagaatcaa 30503156  T
Q  387 ttctacacatcca 399  Q
    |||||||| ||||    
T  30503155 ttctacacttcca 30503143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 42741030 - 42740975
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  42741030 taaaaatcaattctagaatcaaaagctacaaatcttagcttcaagtagaatcaatt 42740975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 394
Target Start/End: Complemental strand, 16518909 - 16518718
Alignment:
Q  201 ctaaaagtaagttgaaagtaaagtgacttgtgtttccatacattcttcttgtaaaaatgagttgaactataaatttctt--taaaaatcaattctagaat 298  Q
    |||||||| ||||||  ||||| ||| ||||||||  |||||||| |   |||||| ||||||||||||||||||| |   ||||| |||  | || |||    
T  16518909 ctaaaagtgagttgagggtaaaatgatttgtgtttggatacattcat---gtaaaagtgagttgaactataaatttgtgcgtaaaagtcatct-tataat 16518814  T
Q  299 caaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcagaatcaattctacac 394  Q
    ||||||||||||||| || |||| ||| ||||||||||| ||  |||||||| |||   | |||||||||||||||  ||||||||||||||||||    
T  16518813 caaaagctacaaatcctatcttctagtagaatcaattctggaagcaaaaccaattcatttgaaaagcaaccaaacatatcagaatcaattctacac 16518718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 254 - 394
Target Start/End: Complemental strand, 12037142 - 12037000
Alignment:
Q  254 aaaatgagttgaactataaatttcttta--aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccag 351  Q
    |||| ||||||||| |||||||| ||||  |||||||||| ||||||||||||||||||||  ||| ||||| | ||||||||||| ||  || |||||     
T  12037142 aaaaagagttgaaccataaatttgtttatgaaaatcaattgtagaatcaaaagctacaaattttagtttcaactagaatcaattctagacacataaccaa 12037043  T
Q  352 ttctacttaaaagcaaccaaacacgtcagaatcaattctacac 394  Q
    ||||||   | | |||||||||| || ||||||| ||||||||    
T  12037042 ttctacacgacaacaaccaaacatgttagaatcagttctacac 12037000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 250 - 337
Target Start/End: Complemental strand, 43501208 - 43501121
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttctttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    ||||||| ||||||||| ||||| ||| | | | ||||||||||| |||||||||||||||||| ||| ||||||| |||||||||||    
T  43501208 tgtaaaactgagttgaattataattttgtgttagaatcaattctaaaatcaaaagctacaaatcctagtttcaagtagaatcaattct 43501121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 280 - 392
Target Start/End: Original strand, 2002727 - 2002839
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtca 379  Q
    |||||||||||| |||||| |||| ||||||||| ||||||||||| ||||||  ||| ||| ||||| || |||||||  |||||||||||  | ||||    
T  2002727 taaaaatcaattttagaatgaaaaactacaaatcctagcttcaagtagaatcaggtctggaggcaaaatcaattctactagaaagcaaccaagtatgtca 2002826  T
Q  380 gaatcaattctac 392  Q
      |||||||||||    
T  2002827 acatcaattctac 2002839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 200 - 312
Target Start/End: Complemental strand, 33502366 - 33502258
Alignment:
Q  200 actaaaagtaagttgaaagtaaagtgacttgtgtttccatacattcttcttgtaaaaatgagttgaactataaatttcttt--aaaaatcaattctagaa 297  Q
    ||||||||||||||||| ||||||||| ||||||||  |||||||      |||||| ||||||||||||||||| | | |  ||||||||||| |||||    
T  33502366 actaaaagtaagttgaatgtaaagtgatttgtgtttggatacatt------gtaaaagtgagttgaactataaatatgtgtgtaaaaatcaattttagaa 33502273  T
Q  298 tcaaaagctacaaat 312  Q
    ||||||| |||||||    
T  33502272 tcaaaagttacaaat 33502258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 10618861 - 10618947
Alignment:
Q  158 aaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccatacatt 244  Q
    |||||||||||| |||||| ||||| |||||||||||||||| |||||| | | ||||| ||||||||| || |||||  |||||||    
T  10618861 aaaattgatttttagtgaattgattttgtaaaattgattctagctaaaaatgaattgaaggtaaagtgaattatgtttgtatacatt 10618947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 136 - 302
Target Start/End: Original strand, 11759748 - 11759913
Alignment:
Q  136 tatggttggttttgtggtcacaaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgttt 235  Q
    |||| |||||| || ||| | ||||||||| |||||||||| ||||| ||||||||||||| | | ||||||| ||||||| ||||| ||  ||||||||    
T  11759748 tatgtttggttatgaggtgaaaaaaattgagtttgagtgaattgattttgtaaaattgattttgattaaaagtgagttgaaggtaaattggtttgtgttt 11759847  T
Q  236 ccatacattcttcttgtaaaaatgagttgaactataaatt--tctttaaaaatcaattctagaatcaaa 302  Q
      |||||  |||  |||||   ||| ||||||||||||||  | | |||||||||||||||||||||||    
T  11759848 gtataca--ctt-atgtaagcgtgatttgaactataaatttgtatgtaaaaatcaattctagaatcaaa 11759913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 38129421 - 38129474
Alignment:
Q  155 acaaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagt 208  Q
    ||||||||||||||||| |||| ||||| |||||||| ||||||||||||||||    
T  38129421 acaaaaattgattttgaatgaattgattctgtaaaatggattctaactaaaagt 38129474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 375
Target Start/End: Complemental strand, 22536083 - 22535956
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttcttt--aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaa 347  Q
    |||||||||||||| |||||||||| | | |  |||||| ||||||| ||||||||||| |||||  ||  ||||||| |||||||||||  || |||||    
T  22536083 tgtaaaaatgagtttaactataaatatgtgtgcaaaaattaattctaaaatcaaaagcttcaaattctaaattcaagtagaatcaattctaaaggcaaaa 22535984  T
Q  348 ccagttctacttaaaagcaaccaaacac 375  Q
     || |||||||| | || ||||||||||    
T  22535983 tcaattctacttgacagtaaccaaacac 22535956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 394
Target Start/End: Original strand, 33502848 - 33502995
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttc--tttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtt-gaatcaattcttgagccaaa 346  Q
    |||||||||||||||||| ||||||||   | ||| |||||  |||||| |||||| ||  ||||  |||||||||||| ||||||||||| ||  ||||    
T  33502848 tgtaaaaatgagttgaacaataaattttagtgtaataatcacatctagactcaaaaacttgaaattctagcttcaagttagaatcaattctggatgcaaa 33502947  T
Q  347 accagttctacttaaaagcaaccaaacacgtcagaatcaattctacac 394  Q
    | ||||| ||||  | |||||||||||| |||| |||||||| |||||    
T  33502948 atcagttttactcgagagcaaccaaacatgtcaaaatcaattttacac 33502995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 338
Target Start/End: Complemental strand, 44439339 - 44439248
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttc--tttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtt-gaatcaattctt 338  Q
    ||||||| |||||||||| ||||||||   | | |||||||||| |||||||||||||| |||||  |||||||||||| ||||||||||||    
T  44439339 tgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaaattttagcttcaagttagaatcaattctt 44439248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 189 - 335
Target Start/End: Original strand, 4894099 - 4894244
Alignment:
Q  189 aattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccatacattcttcttgtaaaaatgagttgaactataaattt--ctttaaaaat 286  Q
    ||||||||||| |||||| ||||||||| ||||||||| || |||||  |||||   ||| | ||||| ||| |||||  ||||||||   | ||| |||    
T  4894099 aattgattctagctaaaattaagttgaaggtaaagtgatttatgtttagataca---ttcatttaaaagtgacttgaataataaatttgagtataataat 4894195  T
Q  287 caattctagaatcaaaagctacaaatcatagcttcaagttgaatcaatt 335  Q
    ||||| |||||||||||||||| | |  ||| |||||||||||||||||    
T  4894196 caattatagaatcaaaagctacgatttctagtttcaagttgaatcaatt 4894244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 337
Target Start/End: Original strand, 33019156 - 33019245
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttcttta--aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    ||||||| ||||||||||||||||||| | |   ||||||||||||| || ||||||||||||||  ||||||||| |  ||||||||||    
T  33019156 tgtaaaagtgagttgaactataaatttatgtgtgaaaatcaattctaaaaccaaaagctacaaattctagcttcaaatataatcaattct 33019245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 11650665 - 11650730
Alignment:
Q  141 ttggttttgtggtcacaaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaa 206  Q
    ||||||||| | | |||||||||||||||||||||| ||||| |||||| |||||| | |||||||    
T  11650665 ttggttttgcgttgacaaaaattgattttgagtgaattgattatgtaaatttgattatgactaaaa 11650730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 36307142 - 36307073
Alignment:
Q  155 acaaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagt 224  Q
    |||||||||||| ||||||||| ||||| ||||||||||||| |   ||||||| ||||||| |||||||    
T  36307142 acaaaaattgatcttgagtgaattgattatgtaaaattgattatggataaaagtgagttgaacgtaaagt 36307073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 42982597 - 42982544
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaa 333  Q
    |||||||||||||| |||||||||||||||| |  ||||||||||| |||||||    
T  42982597 taaaaatcaattctggaatcaaaagctacaatttctagcttcaagtagaatcaa 42982544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 352 - 393
Target Start/End: Complemental strand, 43501124 - 43501083
Alignment:
Q  352 ttctacttaaaagcaaccaaacacgtcagaatcaattctaca 393  Q
    |||||||| |||||||||||||| ||||||||||||||||||    
T  43501124 ttctacttgaaagcaaccaaacatgtcagaatcaattctaca 43501083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 37745787 - 37745847
Alignment:
Q  136 tatggttggttttgtggtcacaaaaattgattttgagtgaaatgattgtgtaaaattgatt 196  Q
    |||| ||||||||| ||| | || ||||||||||||||||| ||||| |||||||||||||    
T  37745787 tatgtttggttttgcggtgataataattgattttgagtgaattgattatgtaaaattgatt 37745847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 680203 - 680316
Alignment:
Q  159 aaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccatacattcttcttgtaaaaat 258  Q
    |||||||||||||||||| ||||| |||||| |||| |||  || ||| | ||||||| ||||||||  |||||||| ||||||   ||| ||||||| |    
T  680203 aaattgattttgagtgaattgattatgtaaagttgagtctgtct-aaattgagttgaaggtaaagtgttttgtgtttgcataca---ttcatgtaaaagt 680298  T
Q  259 gagttgaactataaattt 276  Q
    |||||||| | |||||||    
T  680299 gagttgaattctaaattt 680316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 42774777 - 42774832
Alignment:
Q  167 tttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaa 222  Q
    ||||| |||| ||||| ||||||||||||||| ||||||| ||||||||| |||||    
T  42774777 tttgaatgaattgattttgtaaaattgattctgactaaaaataagttgaaggtaaa 42774832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 310
Target Start/End: Complemental strand, 7630245 - 7630216
Alignment:
Q  281 aaaaatcaattctagaatcaaaagctacaa 310  Q
    ||||||||||||||||||||||||||||||    
T  7630245 aaaaatcaattctagaatcaaaagctacaa 7630216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 316
Target Start/End: Original strand, 8800698 - 8800766
Alignment:
Q  250 tgtaaaaatgagttgaactataaatttcttta--aaaatcaattctagaatcaaaagctacaaatcata 316  Q
    ||||||| ||||||||| ||||||||| | ||  |||||||||| |||| ||||||| |||||||||||    
T  8800698 tgtaaaagtgagttgaattataaatttgtatattaaaatcaattatagattcaaaagttacaaatcata 8800766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 394
Target Start/End: Complemental strand, 10644686 - 10644543
Alignment:
Q  252 taaaaatgagttgaactataaatttcttta--aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaacc 349  Q
    ||||| ||||||||||||||||||| | ||  ||| | ||||||| ||| |||| ||||||||| || |||||||| |||| |||| | ||| || || |    
T  10644686 taaaagtgagttgaactataaatttatgtatgaaagttaattctataatgaaaaactacaaatcttaacttcaagtagaataaattttggaggcagaatc 10644587  T
Q  350 agttctacttaaaagcaaccaaacacgtcagaatcaattctacac 394  Q
    | |||||||  ||| ||  |||||| |||||| ||||||||||||    
T  10644586 aattctactcgaaa-cagacaaacatgtcagagtcaattctacac 10644543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 383
Target Start/End: Complemental strand, 31453434 - 31453333
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcaga 381  Q
    ||||||||||  |||||||||||  ||||||  ||||||||||| ||||||||| | ||| |||||  | ||||||| || | |||||||||| | ||||    
T  31453434 aaaatcaatttcagaatcaaaaggaacaaattttagcttcaagtagaatcaattatagaggcaaaataaattctactcaacatcaaccaaacatgacaga 31453335  T
Q  382 at 383  Q
    ||    
T  31453334 at 31453333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 680344 - 680408
Alignment:
Q  315 tagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtca 379  Q
    ||||||||||| ||||||||||| ||| ||||| |||||||| |  |||||||| ||||| ||||    
T  680344 tagcttcaagtagaatcaattctggaggcaaaatcagttctattcgaaagcaactaaacatgtca 680408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 43717498 - 43717422
Alignment:
Q  159 aaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgttt 235  Q
    ||||||||| ||| |||| | ||| |||||||||||||||||||||| || ||| ||  ||||||||| || |||||    
T  43717498 aaattgattctgaatgaactaattttgtaaaattgattctaactaaatgttagtcgagtgtaaagtgatttatgttt 43717422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 397
Target Start/End: Original strand, 14045 - 14262
Alignment:
Q  178 tgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgacttgtgtttccatacattcttcttgtaaaaatgagttgaactataaatttc 277  Q
    ||||| |||||||||||||||  ||| || | ||||||| ||||||||| || |||||  |||||||| |   || ||| |||||||||  ||||||||     
T  14045 tgattttgtaaaattgattcttgctacaattgagttgaaggtaaagtgatttatgtttggatacattcat---gtgaaagtgagttgaaaaataaatttg 14141  T
Q  278 --tttaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacac 375  Q
      | ||||||||||||||||||||| ||||||  | |  ||||||||||| ||||||||||||| | ||||| || |||||||| ||   || | |||||    
T  14142 agtgtaaaaatcaattctagaatcataagcta-gattgctagcttcaagtagaatcaattcttgtgacaaaatcaattctactttaaccaaatccaacac 14240  T
Q  376 gtcagaatcaattctacacatc 397  Q
     ||| |||||||||||||||||    
T  14241 ttcaaaatcaattctacacatc 14262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 394
Target Start/End: Complemental strand, 31877 - 31765
Alignment:
Q  282 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcaga 381  Q
    ||||||||||| | |||||||||||||||||| |||||||||||  |||||||| | ||| || || || || ||||  | | |||||||||| ||||||    
T  31877 aaaatcaattcaataatcaaaagctacaaatcctagcttcaagtataatcaattttggaggcagaatcaattttactcgacaacaaccaaacatgtcaga 31778  T
Q  382 atcaattctacac 394  Q
    |||||||||||||    
T  31777 atcaattctacac 31765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 337
Target Start/End: Original strand, 220636 - 220693
Alignment:
Q  280 taaaaatcaattctagaatcaaaagctacaaatcatagcttcaagttgaatcaattct 337  Q
    |||||||||||||||||||||||| || |||| ||||||||||||| |||||||||||    
T  220636 taaaaatcaattctagaatcaaaaactgcaaaacatagcttcaagtagaatcaattct 220693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 859 - 920
Alignment:
Q  155 acaaaaattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaa 216  Q
    ||||||||||||||| | |||| ||||| | |||||||||||| |||||||| |||||||||    
T  859 acaaaaattgattttaaatgaattgattctctaaaattgattccaactaaaaataagttgaa 920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 18600 - 18568
Alignment:
Q  184 tgtaaaattgattctaactaaaagtaagttgaa 216  Q
    |||||||||||||||||| ||||||||||||||    
T  18600 tgtaaaattgattctaacaaaaagtaagttgaa 18568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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