View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19058_high_74 (Length: 250)

Name: NF19058_high_74
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19058_high_74
NF19058_high_74
[»] chr2 (5 HSPs)
chr2 (127-250)||(30413103-30413227)
chr2 (127-237)||(30416145-30416256)
chr2 (127-238)||(30414798-30414910)
chr2 (67-104)||(30413074-30413111)
chr2 (13-45)||(30413009-30413041)


Alignment Details
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 127 - 250
Target Start/End: Original strand, 30413103 - 30413227
Alignment:
Q  127 cgtataatatttttgttgaaagataatatacttgtcgcaccaaaagtaactttaatgcgtaatatattatggcccacttcc-ttattatgcgacaactaa 225  Q
    ||||||||||||||||||| |||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||  ||| ||||||||||    
T  30413103 cgtataatatttttgttgatagataatacacttgtcacaccaaaggtaactttaatgcgtaatatattatggcccacttccatttatattcgacaactaa 30413202  T
Q  226 taactttacattgttaggccggatg 250  Q
    ||||||| |||||||||| ||||||    
T  30413203 taacttttcattgttaggtcggatg 30413227  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 237
Target Start/End: Original strand, 30416145 - 30416256
Alignment:
Q  127 cgtataatatttttgttgaaagataatatacttgtcgcaccaaaagtaactttaatgcgtaatatattatggcccacttccttat-tatgcgacaactaa 225  Q
    |||||| |||| || |||| |||||||| | ||||| ||||||| |||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||    
T  30416145 cgtatactattatttttgatagataatacagttgtcacaccaaaggtaattttaatgcataatatattatggcccacttacttatatatgcgacaactaa 30416244  T
Q  226 taactttacatt 237  Q
    ||||||||||||    
T  30416245 taactttacatt 30416256  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 30414798 - 30414910
Alignment:
Q  127 cgtataatatttttgttgaaagataatatacttgtcgcaccaaaagtaacttt-aatgcgtaatatattatggcccacttccttat-tatgcgacaacta 224  Q
    |||||| |||||||||| | |||||||| ||||||| ||||||| |||||||| ||||||||||||||||||| ||| || ||||| |||||||||||||    
T  30414798 cgtatactatttttgttaatagataatacacttgtcacaccaaaggtaacttttaatgcgtaatatattatggtccaatttcttatatatgcgacaacta 30414897  T
Q  225 ataactttacattg 238  Q
    |||| |||||||||    
T  30414898 ataa-tttacattg 30414910  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 30413074 - 30413111
Alignment:
Q  67 gttgataccaatcaaaatcatttatttatcgtataata 104  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30413074 gttgataccaatcaaaatcatttatttatcgtataata 30413111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 30413009 - 30413041
Alignment:
Q  13 aatataagaaaagacaaagttctatacacccac 45  Q
    |||||||||||||||||||||||||||||||||    
T  30413009 aatataagaaaagacaaagttctatacacccac 30413041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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