View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_high_81 (Length: 244)
Name: NF19058_high_81
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_high_81 |
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Alignment Details
Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 21532593 - 21532779
Alignment:
| Q |
17 |
aagatatagatttggaattaattagaatttatatcttttaaacattcaaagttgtggatatgggtatattttagaaatggaatatgatgattaattacga |
116 |
Q |
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| T |
21532593 |
aagatatagatttggaattaattagaatttatatattttaaacattcaaagttgtggatatgggtatattttagaaatggaat---atgattaattacga |
21532689 |
T |
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| Q |
117 |
atttgaattcagtcnnnnnnnnnntataggtcatcgtttttctttgaccaaggaatcaggtatgtttttaataaattgactaaactttaaatgaaa |
212 |
Q |
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| T |
21532690 |
attttaaaaaa------aaaaatatataggtcatcgtttttctttgactaaggaatcaggtatgtttttaataaattgactaaactttaaatgaaa |
21532779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 54 - 244
Target Start/End: Original strand, 21528498 - 21528683
Alignment:
| Q |
54 |
ttaaacattcaaagttgtggatatgggtatattttagaaatggaatatgatgattaattacgaatttgaattcagtcnnnnnnnnnntataggtcatcgt |
153 |
Q |
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| T |
21528498 |
ttaaacattcaaagttgtggatatggggatactttagaaatggaatatgataa---attacgaatttgaattcagtcaaaaaaaa--tataggtaattgt |
21528592 |
T |
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| Q |
154 |
ttttctttgaccaaggaatcaggtatgtttttaataaattgactaaactttaaatgaaatcaatattttcacgcttaaagtctatattaac |
244 |
Q |
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| T |
21528593 |
ttttctttgactaaggaatcaggtatgtttttaataaattgaataaactttaaatggaattaatatttccacgcttaaagtctatgttaac |
21528683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 21533093 - 21533132
Alignment:
| Q |
205 |
aaatgaaatcaatattttcacgcttaaagtctatattaac |
244 |
Q |
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| T |
21533093 |
aaatgaaatcaatattttcacgcttaaagtctatattaac |
21533132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 24015631 - 24015571
Alignment:
| Q |
158 |
ctttgaccaaggaatcaggtatgtttttaataaattgactaaactttaaatgaaatcaata |
218 |
Q |
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| T |
24015631 |
ctttgactaacgaattaggtatctttttattaaattgaataaactttaaatgaaatcaata |
24015571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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