View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_high_9 (Length: 552)
Name: NF19058_high_9
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 9 - 534
Target Start/End: Complemental strand, 44958896 - 44958368
Alignment:
| Q |
9 |
ggtagattattctctttaaacatgcatcttgccatgttcataatggtcttttcctcctcttcatcaaacattatgtatagatgtgaatggtgaagtgatc |
108 |
Q |
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| T |
44958896 |
ggtagcttattctctttaaacatgcatctttccatgttcataatggtcttttcctcctcttcatcaaacattatgtatagatgtgaatggtgaagtgatc |
44958797 |
T |
|
| Q |
109 |
tcatgttgaattcccatctcatcaaagaaattctccaactatttagatgtatattctcatccttcatcacttctaagcatatttacctgtctgcttcttt |
208 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44958796 |
tcatgttgaattcccatctcatcaaaaaaattctctaactatttagatgtatattctcatccttcatcacttctaagcatatttacctgtctgcttcttt |
44958697 |
T |
|
| Q |
209 |
ttcaactaatactttgaacttattgaagacatgaaacacttcatctttagtcttgattaggtaaacctacgtaattgtactgtattcacccataaatgag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44958696 |
ttcaactaatactttgaacttattgaagacatgaaacacttcatctctagtcttgattaggtaaacctacgtaattgtactgtattcacccataaatgag |
44958597 |
T |
|
| Q |
309 |
acaatgtacctattccctcacaatgaaaatgtatcaaatggtccactaacatcttattaaaccacatcaagctttgccctcactggaatacgagaaacaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
44958596 |
acaatgtacctattccctcacaatgaaaatgtatcaaatggtccactaacatcttattaaaccacatcaagctttgccctcattggaatatgagaaacaa |
44958497 |
T |
|
| Q |
409 |
atgaggtccttgctcgtcaagcaacttaattcgggaaaaccatgcaccatt---gaccttgacttcaaaatgctaagaaccttaaagttaggtgtctata |
505 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44958496 |
atgagttccttgctcgtcaagcaacttaattcgggaaaaccatgcaccattgacgaccttgacttcaaaatgctaagaaccttaaagttaggtgtctata |
44958397 |
T |
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| Q |
506 |
cccaaggtaccacaaccatgttacatcat |
534 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
44958396 |
cccaaggtaccacaaccatgttacatcat |
44958368 |
T |
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