View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_high_92 (Length: 231)
Name: NF19058_high_92
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_high_92 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 6 - 212
Target Start/End: Complemental strand, 410980 - 410774
Alignment:
| Q |
6 |
atgtcgaagaatatatactcttgattgaaatccttttgcactttgcagtatgtagaaatattttatttttgctattaacaaatagacaattgtttacgtg |
105 |
Q |
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| T |
410980 |
atgtcgaagcttatatgctcttgattgaaatctttttgcactttgcggtatgtaaaaatattttatttttgctattaacaaatagacaattgtttacgtg |
410881 |
T |
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| Q |
106 |
cttaataagacataatttagaaaaatgatattttgtttgaatagtaacaactgtggatttttgtcataaataaaaatatgtacacatgcctaattccatg |
205 |
Q |
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| T |
410880 |
cttaataagacataatttagaaaaatgatattttgtttgaatagtaacaactgtggatttttgtaagaaataaaaatatgtacacatgcctaattccatg |
410781 |
T |
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| Q |
206 |
aaccaca |
212 |
Q |
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| T |
410780 |
aaccaca |
410774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 16803060 - 16803122
Alignment:
| Q |
23 |
ctcttgattgaaatccttttgcactttgcagtatgtagaaatattttatttttgctattaaca |
85 |
Q |
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| T |
16803060 |
ctcttggtcgaaatcactttgcactttgcagcatgtcgaaatattttatttttgctattaaca |
16803122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 36519008 - 36519071
Alignment:
| Q |
23 |
ctcttgattgaaatccttttgcactttgcagtatgtagaaatattttatttttgctattaacaa |
86 |
Q |
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| T |
36519008 |
ctcttggtcgaaatccatttgcactttgcagcatgtcaaaatattttatttttggtattaacaa |
36519071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 36801962 - 36801920
Alignment:
| Q |
40 |
tttgcactttgcagtatgtagaaatattttatttttgctatta |
82 |
Q |
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| T |
36801962 |
tttgcactttgcagtatgtcgaaatattttattattggtatta |
36801920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 24411917 - 24411872
Alignment:
| Q |
40 |
tttgcactttgcagtatgtagaaatattttatttttgctattaaca |
85 |
Q |
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| T |
24411917 |
tttgcactttgcagcatgtcgaaatattttatttttggtattaaca |
24411872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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