View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_low_12 (Length: 517)
Name: NF19058_low_12
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_low_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 19 - 517
Target Start/End: Complemental strand, 40126278 - 40125780
Alignment:
| Q |
19 |
atggggctactatcgaaggtgacacgagtatttcatgagaatggattatccataacaagaattgagtttggagtagagggtgaagcagcaataggatcat |
118 |
Q |
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| T |
40126278 |
atggggctactatcgaaggtgacacaagtaattcatgagaatggattatccataacaagaattgagtttggagtagagggtgaagcagcaataggatcac |
40126179 |
T |
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| Q |
119 |
tctatgttacaggttgttcaggtcaagatgtgaatgaaaatatagtagagttgataaaaagagaaattggtgggtcaattgttttggctcaaagttctcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40126178 |
tctatgttacaggttgttcaggtcaagatgtgaatgaaaatatagtagagttgataaaaagagaaattggtgggtcaattgttttggctcaaagttctcc |
40126079 |
T |
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| Q |
219 |
atacagggactctcaatcctcatcatccagtaacaatagtagagatgttataccaacattttcttttggaagcatgattcggtctcacctcgagcgtctc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40126078 |
atacagggactctcaatcctcatcatccagtaacaatagtagagatgttataccaacattttcttttggaggcatgattcggtctcacctcgagcgtctc |
40125979 |
T |
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| Q |
319 |
atcaacaatttcaggccaattagatcttaatcagatactcaaattactagcgttgtatttaaacttggagaaatgtttgaattgaaaatcttagttgtac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
40125978 |
atcaacaatttcaggccaattagatcttaatcagatactcaaattactagcgttgtatttaaacttcgagaaatgtttgaattgcaaatcttagttgtac |
40125879 |
T |
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| Q |
419 |
agcatatgtgaagggtgacttccctctatgatttgagagttaattctttaatttgttgaaggggatgcataaaactgaaaacaataatcacatgaaata |
517 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40125878 |
agcatatgggaagggtgacttccctctatgatctgagagttaattctttaatttgttgaaggggatgcataaaactgaaaacaataatcacatgaaata |
40125780 |
T |
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