View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19058_low_13 (Length: 504)
Name: NF19058_low_13
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 34 - 305
Target Start/End: Original strand, 352008 - 352279
Alignment:
| Q |
34 |
ttgaacattattaatataggttatctaaacaacccggaagcaacgagggaaacaatagacaaggaaggttggttgcatactggtgacattggattcattg |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
352008 |
ttgaacattattaatataggttatctaaacaacccggaagcaacgagggaaacaatagacaaggaaggttggttgcatactggtgacattggattcattg |
352107 |
T |
|
| Q |
134 |
acgatgatgatgagttgttcatagttgatagacttaaagaattgattaaatacaaaggttttcaagttgctccagctgaacttgaagccattattctctc |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
352108 |
acgatgatgatgagttgttcatagttgatagacttaaagaattgattaaatacaaaggttttcaagttgctccagctgaacttgaagccattattctctc |
352207 |
T |
|
| Q |
234 |
acatcctcaaatttccgatgtcgctgtcgtcccgtaagtgcctatgccctaaaactagttcgatagaatgtg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
352208 |
acatcctcaaatttccgatgtcgctgtcgtcccgtaagtgcctatgccctaaaactagttcgatagaatgtg |
352279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 400 - 488
Target Start/End: Original strand, 352318 - 352406
Alignment:
| Q |
400 |
tgtgtatggttgatatttgcagaatgttagatgaagcagctggtgaggtgccagtagcatttgttgtaagatcaaatggaagtattgac |
488 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
352318 |
tgtgtatggttgatatttatagaatgttagatgaagcagctggtgaggtgccagtagcatttgttgtaagatcaaatggaagtattgac |
352406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 221
Target Start/End: Original strand, 53458393 - 53458526
Alignment:
| Q |
88 |
atagacaaggaaggttggttgcatactggtgacattggattcattgacgatgatgatgagttgttcatagttgatagacttaaagaattgattaaataca |
187 |
Q |
| |
|
|||||||| ||||| ||| | || || ||||||||||| || |||||||| || || || | ||||| |||||| || | || |||||||||||||||| |
|
|
| T |
53458393 |
atagacaaagaaggatggctacaaacaggtgacattggtttaattgacgacgacgacgaactcttcattgttgatcgattaaaggaattgattaaataca |
53458492 |
T |
|
| Q |
188 |
aaggttttcaagttgctccagctgaacttgaagc |
221 |
Q |
| |
|
|||| | ||||| ||||| ||||| || ||||| |
|
|
| T |
53458493 |
aaggataccaagtagctcctgctgagctcgaagc |
53458526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 88 - 272
Target Start/End: Original strand, 45524569 - 45524753
Alignment:
| Q |
88 |
atagacaaggaaggttggttgcatactggtgacattggattcattgacgatgatgatgagttgttcatagttgatagacttaaagaattgattaaataca |
187 |
Q |
| |
|
|||||||| |||||||||||| |||| ||||| ||||| | ||||| || ||||||||||| ||||| ||||||||| | || ||||| || ||||||| |
|
|
| T |
45524569 |
atagacaaagaaggttggttgtatacaggtgatattgggtatattgatgaagatgatgagttattcattgttgatagattgaaggaattaatcaaataca |
45524668 |
T |
|
| Q |
188 |
aaggttttcaagttgctccagctgaacttgaagccattattctctcacatcctcaaatttccgatgtcgctgtcgtcccgtaagt |
272 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| || |||| || ||||| ||||||| |||| ||||| ||||||||||| |
|
|
| T |
45524669 |
aaggatttcaagttgctccagctgaacttgaagctcttcttctgtctcatcccaaaatttctgatgctgctgttgtcccgtaagt |
45524753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University