View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_low_20 (Length: 452)
Name: NF19058_low_20
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_low_20 |
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| [»] chr2 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 67 - 452
Target Start/End: Original strand, 10749058 - 10749463
Alignment:
| Q |
67 |
cctaaagtatcttcagcctgaaaccaaggacatttgatatagagac--tacttaaacaattgatctcttccaacaaaaagatgttctatacatatcagtt |
164 |
Q |
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| T |
10749058 |
cctaaagtatcttcatcctgaaaccaaggacatttgatatagagagattacttaaacaattgatctcttccaacaaaaagatgttctatacatatcaatt |
10749157 |
T |
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| Q |
165 |
acggatctaacttataattacatgcttaagaaacttagttatctctcaactatatcacactatgttagattttttgacaatacactgtatgatcgtgtct |
264 |
Q |
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| T |
10749158 |
acagatctaacttataattacatgcttaagaaacttagttatctctcaactatatcacactatgttagattttttgacaagacactatatgatcgtgtct |
10749257 |
T |
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| Q |
265 |
tattggatacaaacattatc------------------ggttatgtttggatttaaaaattgactccaaacaaatgttagagttaagtttcatgttgtta |
346 |
Q |
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| T |
10749258 |
tattggatacaaacatcatcgagtttgattggatttaaggttatgtttggatctaaaaattgactccaaacaaatgttagagttaagtttcatgttgtta |
10749357 |
T |
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| Q |
347 |
aatgaacttggatctcgttctaaaaactagttaaatgaataaaaatatccaaacacatttatacacttaattgtctaagaatgaatctaaataacataag |
446 |
Q |
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| T |
10749358 |
aatgaacttggatctcgttctaaaaactagttaaatgaataaaaatgtcaaaacacatctatacactcaatcgtctaagaatgaatctaaacaatataag |
10749457 |
T |
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| Q |
447 |
actcca |
452 |
Q |
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| T |
10749458 |
actcca |
10749463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 10748999 - 10749036
Alignment:
| Q |
13 |
aatatctcaaatatggatttaattgattcatggtcgag |
50 |
Q |
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| T |
10748999 |
aatatctcaaatatggatttaattgattcatggtcgag |
10749036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 300 - 452
Target Start/End: Complemental strand, 23272675 - 23272520
Alignment:
| Q |
300 |
taaaaattgactccaaacaaatgtta-gagttaa--gtttcatgttgttaaatgaacttggatctcgttctaaaaactagttaaatgaataaaaatatcc |
396 |
Q |
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| T |
23272675 |
taaaaattgactccaaacaaatgttaagagttataggtttcatgttgttaaatgaacttggatctcgttctaaaaattagttaaatgaataaaaatgtcc |
23272576 |
T |
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| Q |
397 |
aaacacatttatacacttaattgtctaagaatgaatctaaataacataagactcca |
452 |
Q |
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| T |
23272575 |
aaacacatttatacactcaatcgtctaagaatgaatctaaacaatataagactcca |
23272520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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