View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_low_23 (Length: 431)
Name: NF19058_low_23
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 10 - 415
Target Start/End: Complemental strand, 13283247 - 13282842
Alignment:
| Q |
10 |
aacaaaataaacaatataattaatgtccataactccatattatacttcaaaatatataaagatgcatacagaatgaagtaatgtaaaacaagaattgagt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13283247 |
aacaaaataaacaatataattaatgtccataactccatattatacttcaaaatatataaagatgcatacagaatcaagtaatgtaaaacaagaattgagt |
13283148 |
T |
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| Q |
110 |
aactcaagtgatacgagctcggttgaaggatgaaacatcgagtataaaactctagtgaagaataaaatactgacataacgactaatatactaacatttgt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
13283147 |
aactcaagtgatacgagctcggttgaaggatgaaacatcgagtataaaactctagtgaagaacaaaatagtgacataacgactaatatactaacatttgt |
13283048 |
T |
|
| Q |
210 |
atctataaaaatattaatgatgtatatcgcacctaacatcttggcacacatgggaaaggcgtctaggttcatcatcaagatgacaaccctcatcaaaatt |
309 |
Q |
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| T |
13283047 |
atctataaaaatattaatgatgtatatcgcacctaacatcttggcacacatgggaaaggcgtcttggttcatcatcaagatgacaaccctcatcaaaatt |
13282948 |
T |
|
| Q |
310 |
ctgtgagtagctaataggatcatattgaaaagaaatttgcttgtgcccacccaagattcttctctccctcaagaattttctaagtaggttcctccacctc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13282947 |
ctgtgagtagctaataggatcatattgaaaagaaatttgcttgtgcccacccaagattcttctctccctcaagaattttctaagtaggttcctccacctc |
13282848 |
T |
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| Q |
410 |
cacttt |
415 |
Q |
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|||||| |
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| T |
13282847 |
cacttt |
13282842 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 26533843 - 26533892
Alignment:
| Q |
173 |
aaaatactgacataacgactaatatactaacatttgtatctataaaaata |
222 |
Q |
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|||||||| ||||||| ||||||||||||||||||| || || ||||||| |
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| T |
26533843 |
aaaatactaacataacaactaatatactaacatttggatataaaaaaata |
26533892 |
T |
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