View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19058_low_26 (Length: 421)

Name: NF19058_low_26
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19058_low_26
NF19058_low_26
[»] chr7 (2 HSPs)
chr7 (117-414)||(1395965-1396262)
chr7 (19-117)||(1395841-1395939)
[»] chr2 (2 HSPs)
chr2 (180-220)||(23479445-23479485)
chr2 (327-383)||(23479589-23479648)
[»] chr1 (1 HSPs)
chr1 (137-195)||(3544019-3544077)


Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 117 - 414
Target Start/End: Original strand, 1395965 - 1396262
Alignment:
Q  117 taagataatgtctctagctatttctcatctttaatttgctaataatactttgttagttggtgttaaaagttgggctaatattagagctttaaaagctttg 216  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1395965 taagataatgtctctagctatttctcatctttaatttgctgataatactttgttagttggtgttaaaagttgggctaatattagagctttaaaagctttg 1396064  T
Q  217 cttcaccttcttgaggcgcccttgagtctcaaagttaattttcacaagagtatgctagtaggtgtcaacgttcttgattcttagttgatagaggctgcct 316  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1396065 cttcacctttttgaggcgcccttgagtctcaaagttaattttcacaagagtatgctagtaggtgtcaacgttcttgattcttagttgatagaggctgcct 1396164  T
Q  317 ccattctgaattgtaaaatgggtcgtttaccttttgtttacttggagattcttattggtggagactcacgtaacttgaacgtttggtgtcctatgctt 414  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1396165 acattctgaattgtaaaatgggtcgtttaccttttgtttacttggagattcttattggtggagactcacgtaacttgaacgtttggtgtcctatgctt 1396262  T

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Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 1395841 - 1395939
Alignment:
Q  19 aagaggcatgagataaggtgattcactctctcctttcctcttcttaatagctgctgagggtctcaatgtgatgataaatgctttagtgaaggctggact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1395841 aagaggcatgagataaggtgattcactctctcctttcctcttcttaatagctgctgaggatctcaatgtgatgataaatgctttagtgaaggctggact 1395939  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 23479445 - 23479485
Alignment:
Q  180 taaaagttgggctaatattagagctttaaaagctttgcttc 220  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  23479445 taaaagttcggctaatattagagttttaaaagctttgcttc 23479485  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 383
Target Start/End: Original strand, 23479589 - 23479648
Alignment:
Q  327 ttgtaaaatgggtcgtttaccttttgtttacttggagat---tcttattggtggagactc 383  Q
    ||||||||||||||||||||||||  ||||||||| |||   | ||||||||||||||||    
T  23479589 ttgtaaaatgggtcgtttacctttcctttacttggggatacctattattggtggagactc 23479648  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 3544019 - 3544077
Alignment:
Q  137 tttctcatctttaatttgctaataatactttgttagttggtgttaaaagttgggctaat 195  Q
    |||| |||||| |||||||| || ||||| ||||| |||| ||||||||||||||||||    
T  3544019 tttcccatcttcaatttgctgatgatactctgttacttggagttaaaagttgggctaat 3544077  T

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