View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19058_low_3 (Length: 763)
Name: NF19058_low_3
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_low_3 |
 | |
|
| [»] scaffold1297 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 716; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 18 - 753
Target Start/End: Complemental strand, 8317129 - 8316394
Alignment:
| Q |
18 |
aaactttctaagaagtggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttgaggagttttaggtgtccaaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8317129 |
aaactttctaagaagtggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttgaggagttttaggtgtccaaaa |
8317030 |
T |
|
| Q |
118 |
tgaacagaaatgctgggaaattttatggtggagaacacatggagtaccaattctaattcttctaaggaggtgcagttgaaaagataatgagatgtaagag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8317029 |
tgaacagaaatgctgggaaattttatggtggaggacacatggagtaccaattctaattcttctaaggaggtgcagttgaaaagataatgagatgtaagag |
8316930 |
T |
|
| Q |
218 |
cagaaaagaggagctgataaaaagatgaatggatccgaagaatttttactctccgattcaagatgctagagatccaagtattttgaagggatatatcacg |
317 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8316929 |
cagaaaaggggagctgataaaaagatgaatggatccgaagaatttttactctccgattcaagatgctagagatccaagtattttgaagggatatatcacg |
8316830 |
T |
|
| Q |
318 |
cttgttattgatcagtaaagaaaatctttccaactccatgcttgagattgaagtaaggagaagtgctctgccaacaaaatttacaaactgctgctccttt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8316829 |
cttgttattgatcagtaaagaaaatctttccaactccatgcttgagattgaagtaaggagaagtgctctgccaacaaaatttacaaactgctgctccttt |
8316730 |
T |
|
| Q |
418 |
ttacctgattctattttcatcccgctctcaaaatctatctccacacgcctttcatatacttctgcatcgcgcaaattggctttatgattgccgcaaacat |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8316729 |
ttacctgattctattttcatcccgctctcaaaatctatctccacacgcctttcatatacttctgcatcgcgcaaattggctttatgatttccgcaaacat |
8316630 |
T |
|
| Q |
518 |
gacaccttggacatacagtcaatttatactgcatccaaaatcatcagagttacttaatttatcatcaatgttttggggtggactatcaaataagataaca |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8316629 |
gacaccttggacatacagtcaatttatactgcatccaaaatcatcagagttacttaatttatcatcaatgttttggggtggactatcaaataagataaca |
8316530 |
T |
|
| Q |
618 |
agagggagaaaactaaccttatcatagtcatagcaataatcagtgcaaatttcttcacaataagaacacaatggattataattgtatgataaatcaatat |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8316529 |
agagggagaaaactaaccttatcatagtcatagcaataatcagtgcaaatttcttcgcaataagaacacaatggattataattgtatgataaatcaatat |
8316430 |
T |
|
| Q |
718 |
catctaagtcgagcttggtaatggatgatgtccatc |
753 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8316429 |
catctaagtcgagcttggtgatggatgatgtccatc |
8316394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1297 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1297
Description:
Target: scaffold1297; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 310
Target Start/End: Original strand, 1846 - 2125
Alignment:
| Q |
34 |
ggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttgaggagttttaggtgtccaaaatgaacagaaatgctgg |
133 |
Q |
| |
|
|||||||||||| ||| | |||| ||||||| |||||| | |||||||| |||||||| ||||| | |||||| ||| |||||||| ||| | || |
|
|
| T |
1846 |
ggtaaattaaggttcatagagtcactagagggatcaatgtcaaaaaagactccatacaagttgagaaattttagctgttgaaaatgaagagaggtagagg |
1945 |
T |
|
| Q |
134 |
gaaattttatggtggagaacacatggagtaccaattctaattcttctaaggaggtgcagttgaaaagataatgagatgtaagagcagaaaagaggagctg |
233 |
Q |
| |
|
||||||||||||| ||| |||| | || ||| |||| ||||| || || | || ||||||||||| ||||||| || ||||||| |||| | |
|
|
| T |
1946 |
gaaattttatggtagagtacactttaagccgcaactctagttcttgcaatgaagaagagccgaaaagataatcagatgtactaggagaaaaggggagttt |
2045 |
T |
|
| Q |
234 |
ataaaaagatgaatggatccgaagaatttttactctcc---gattcaagatgctagagatccaagtattttgaagggata |
310 |
Q |
| |
|
||||||| |||||||||||| |||| | || ||||||| |||||||||| |||||||||| ||||||||||| |||| |
|
|
| T |
2046 |
ataaaaatatgaatggatcctaagattcttgactctcctattattcaagatggtagagatccatgtattttgaagtgata |
2125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 28111457 - 28111560
Alignment:
| Q |
18 |
aaactttctaagaagtggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttgaggagttttaggtgtccaaaa |
117 |
Q |
| |
|
||||||| ||| ||| |||||||||||| ||| | |||| ||||||| |||||| | |||||||| |||||||| ||||||| ||| || ||| |||| |
|
|
| T |
28111457 |
aaactttttaacaagcggtaaattaaggttcatagagtcactagagggatcaatgtcaaaaaagactccatacaagttgaggaatttcagctgttgaaaa |
28111556 |
T |
|
| Q |
118 |
tgaa |
121 |
Q |
| |
|
|||| |
|
|
| T |
28111557 |
tgaa |
28111560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 277 - 350
Target Start/End: Original strand, 28111704 - 28111777
Alignment:
| Q |
277 |
aagatgctagagatccaagtattttgaagggatatatcacgcttgttattgatcagtaaagaaaatctttccaa |
350 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||| | ||| ||||||| ||||| |||||||| ||||||| |
|
|
| T |
28111704 |
aagatgctagagatccatgtattttgaagtgatacacaacgtttgttatagatcacaaaagaaaagttttccaa |
28111777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University