View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_low_33 (Length: 382)
Name: NF19058_low_33
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 12 - 364
Target Start/End: Complemental strand, 41552250 - 41551898
Alignment:
| Q |
12 |
aagaatattcatctaaggttacatatgaaaattacttaaaagcctctcttgactaatttagattatagacacaacatattttctgagaaaattcataagg |
111 |
Q |
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| T |
41552250 |
aagaaaattcatgtaaggatacatatgaaaattacttaaaagcctctcttgactaatttagattatagacacaacatattttctgagaaaattcataagg |
41552151 |
T |
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| Q |
112 |
atatatatgaaaattacataaaagcatatcttgactaatttagattataaacgcaacatatttggatagaagctacattttggttaggcaatgtcaaaat |
211 |
Q |
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| T |
41552150 |
atatatatgaaaattacataaaagcatatcttgactaatttagattataaacgcaacatatttggatagaagctacattttggttaggcaatgtcaaaat |
41552051 |
T |
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| Q |
212 |
atctattaagaacagacatggacacgtcgacacaacaccgacaataatttgatgacataattcaattttcatatgtgtcggtgtcggatatgatacctat |
311 |
Q |
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| T |
41552050 |
atctattaagaacagacatggacacgtcgacacaacaccaacaataatttgatgacataattcaattttcatatgtgtcggtgtcggatatgatacttat |
41551951 |
T |
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| Q |
312 |
ccgacacctgaggcgtgtttgtgcttcataaaaatgtggacacctactcaaag |
364 |
Q |
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| T |
41551950 |
ccgacacctgaggcgtgtttgtgcttcataaaaatgtggacacctactcaaag |
41551898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 37556946 - 37556880
Alignment:
| Q |
31 |
tacatatgaaaattacttaa----aagcctctcttgactaatttagat--tatagacacaacatatt |
91 |
Q |
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| T |
37556946 |
tacatatgaaaattacttaattaaaagcctctcttgactaatttatattatatagacacaacatatt |
37556880 |
T |
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