View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_low_4 (Length: 694)
Name: NF19058_low_4
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 611; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 57 - 675
Target Start/End: Complemental strand, 46478128 - 46477510
Alignment:
| Q |
57 |
gacaacctcacagctcaactcaatcatgtaaagttaagaatgtttggttcagaagcatgtcctacagcattattatggaggggaaaacacaacagcgcat |
156 |
Q |
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| T |
46478128 |
gacaacctcacagctcaactcaatcatgtaaagttaagaatgtttggttcagaagcatgtcctacagcattattatggaggggaaaacacaacagcgcat |
46478029 |
T |
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| Q |
157 |
tctacgctacttcacaaacttcccatttacgatacactcactcttcctattaaactatcttactcattgattcataaattaatattaatattaatataca |
256 |
Q |
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| T |
46478028 |
tctacgctacttcacaaacttcccatttacgatacactcactcttcctattaaactatcttactcattgattcataaattaatattaatattaatataca |
46477929 |
T |
|
| Q |
257 |
atacaagtaagtaacatgatgccatgccattactaataccccttcatcactacacgcttagcacgcacattatttgacaaatatataaaacaataaccac |
356 |
Q |
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| T |
46477928 |
atacaagtaagtaacatgatgccatgccattactaataccccttcatcactacacgcttagcacgcacattatttgacaaatatataaaacaataaccac |
46477829 |
T |
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| Q |
357 |
attatacagtaatatttcaatcaattaaattaaaataatctaaattccactactatcacagctgtaacaagaatttggtcaaaatcccagaaacaaacaa |
456 |
Q |
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| T |
46477828 |
attatacagtaatatttccatcaattaaattaaaataatctaaattccactactatcacagctgtaacaagaatttggtcaaaatcccagaaacaaacaa |
46477729 |
T |
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| Q |
457 |
tactaattccatcacaaaggtatttctccacatatgaacacagggaaatgtcggaaacacaacccctcgaaactatcaaaatcatatcatattccacttt |
556 |
Q |
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| T |
46477728 |
tactaattccatcacaaaggtatttctccacatatgaacacaaggaaatgtcggaaacacaacccctcgaaactatcaaaatcatatcatattccacttt |
46477629 |
T |
|
| Q |
557 |
gctatgttctacaaagtctacaacaatcaaatagcatgaataattaatcaattaattacataattatcagacaattaatcagaatgtacatatttagtct |
656 |
Q |
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| T |
46477628 |
gctatgttctacaaagtctacaacaatcaaatagcatgaataattaatcaattaattacataattatcagacaattaatcagaatgtacatatttagtct |
46477529 |
T |
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| Q |
657 |
atactacaaaccagatata |
675 |
Q |
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| T |
46477528 |
atactacaaaccagatata |
46477510 |
T |
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