View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19058_low_40 (Length: 343)

Name: NF19058_low_40
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19058_low_40
NF19058_low_40
[»] chr5 (6 HSPs)
chr5 (132-343)||(896369-896580)
chr5 (1-89)||(896239-896327)
chr5 (131-188)||(4376353-4376410)
chr5 (142-191)||(19417445-19417494)
chr5 (142-191)||(29385394-29385443)
chr5 (131-191)||(9904169-9904229)
[»] chr6 (3 HSPs)
chr6 (30-86)||(16193832-16193888)
chr6 (34-84)||(2543848-2543898)
chr6 (30-68)||(11448186-11448224)
[»] chr3 (2 HSPs)
chr3 (36-86)||(29081702-29081752)
chr3 (36-84)||(11512392-11512440)
[»] chr4 (4 HSPs)
chr4 (142-191)||(31846900-31846949)
chr4 (131-188)||(55382505-55382562)
chr4 (30-66)||(36273080-36273116)
chr4 (131-183)||(41306626-41306678)
[»] chr2 (2 HSPs)
chr2 (36-86)||(7755341-7755391)
chr2 (142-191)||(39819063-39819112)
[»] chr1 (8 HSPs)
chr1 (30-68)||(28739304-28739342)
chr1 (142-191)||(9379818-9379867)
chr1 (27-68)||(50754853-50754894)
chr1 (30-82)||(593824-593876)
chr1 (131-167)||(719089-719125)
chr1 (30-86)||(10449447-10449503)
chr1 (36-84)||(28739418-28739466)
chr1 (131-183)||(44291146-44291198)
[»] scaffold1315 (1 HSPs)
scaffold1315 (34-86)||(1816-1868)
[»] scaffold1293 (1 HSPs)
scaffold1293 (34-86)||(203-255)
[»] scaffold0110 (1 HSPs)
scaffold0110 (30-66)||(26631-26667)
[»] chr7 (2 HSPs)
chr7 (36-84)||(7211865-7211913)
chr7 (36-84)||(17272704-17272752)


Alignment Details
Target: chr5 (Bit Score: 148; Significance: 5e-78; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 132 - 343
Target Start/End: Original strand, 896369 - 896580
Alignment:
Q  132 tacacttataacattgtggttgaccgatatcaccaatgttaccaaccacaatttcacccatgcgttatctaaataacatctcagtatattagggacccnn 231  Q
    ||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||      
T  896369 tacacttataatattgtggttggccgatatcactaatgttaccaaccacaatttcactcatgcgttatctaaataacatcacagtatattatggacccaa 896468  T
Q  232 nnnnnncatcatacttcgatagcatcatctattggacccacattagaagaaccgcattctgtcaataaagaagaaccacatatatactcgtaggaatgat 331  Q
          ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||    
T  896469 aaaaaacatcatacttcgatagcatcatctattggacccacattagaagaaccacattctgtcaataaaggagaaccacatatatacttgtaggaatgat 896568  T
Q  332 tacagaaactga 343  Q
    |||| |||||||    
T  896569 tacataaactga 896580  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 896239 - 896327
Alignment:
Q  1 cgcttcattttcaccatgtaggtaacattggataacacttgggtgagattgtggttggtgatattggttaaccacattgtcacaagcgg 89  Q
    |||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||    
T  896239 cgcttcattttccccatgtagataacatcggataacacttgggtgagattgtggttggtgatattgatcaaccacaatgtcacaggcgg 896327  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 4376410 - 4376353
Alignment:
Q  131 gtacacttataacattgtggttgaccgatatcaccaatgttaccaaccacaatttcac 188  Q
    |||||||| | ||||||||||||||| ||  ||| |||||||||||||||||| ||||    
T  4376410 gtacacttgtgacattgtggttgaccaatggcacgaatgttaccaaccacaatgtcac 4376353  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 19417494 - 19417445
Alignment:
Q  142 acattgtggttgaccgatatcaccaatgttaccaaccacaatttcaccca 191  Q
    ||||||| ||||||| || |||||||||| |||||||||||| |||||||    
T  19417494 acattgtagttgaccaatgtcaccaatgtcaccaaccacaatgtcaccca 19417445  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 29385394 - 29385443
Alignment:
Q  142 acattgtggttgaccgatatcaccaatgttaccaaccacaatttcaccca 191  Q
    |||||||||||| || || |||||||||| |||||||||||| |||||||    
T  29385394 acattgtggttggccaatgtcaccaatgtcaccaaccacaatgtcaccca 29385443  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 9904229 - 9904169
Alignment:
Q  131 gtacacttataacattgtggttgaccgatatcaccaatgttaccaaccacaatttcaccca 191  Q
    |||||||| ||||||||||||||| | |||| |||||||| | |||||| ||| |||||||    
T  9904229 gtacacttgtaacattgtggttgatcaatattaccaatgtcaacaaccataatgtcaccca 9904169  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 16193888 - 16193832
Alignment:
Q  30 ggataacacttgggtgagattgtggttggtgatattggttaaccacattgtcacaag 86  Q
    |||||| |||||||||| |||||||||||||| |||||| ||||||| |||||||||    
T  16193888 ggataatacttgggtgacattgtggttggtgacattggtcaaccacaatgtcacaag 16193832  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 2543898 - 2543848
Alignment:
Q  34 aacacttgggtgagattgtggttggtgatattggttaaccacattgtcaca 84  Q
    ||||||||||||| |||||||||||||| |||||  ||||||| |||||||    
T  2543898 aacacttgggtgacattgtggttggtgacattggccaaccacaatgtcaca 2543848  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 11448224 - 11448186
Alignment:
Q  30 ggataacacttgggtgagattgtggttggtgatattggt 68  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  11448224 ggataatacttgggtgacattgtggttggtgatattggt 11448186  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 29081752 - 29081702
Alignment:
Q  36 cacttgggtgagattgtggttggtgatattggttaaccacattgtcacaag 86  Q
    ||||||||||| |||||||||||||| |||||| ||||||| |||||||||    
T  29081752 cacttgggtgatattgtggttggtgacattggtcaaccacaatgtcacaag 29081702  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 11512392 - 11512440
Alignment:
Q  36 cacttgggtgagattgtggttggtgatattggttaaccacattgtcaca 84  Q
    ||||||||||| |||||||||||||| |||||  ||||||| |||||||    
T  11512392 cacttgggtgacattgtggttggtgacattggccaaccacaatgtcaca 11512440  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 31846900 - 31846949
Alignment:
Q  142 acattgtggttgaccgatatcaccaatgttaccaaccacaatttcaccca 191  Q
    |||||||||||| || ||||||||||||| |||||||||||| |||||||    
T  31846900 acattgtggttggccaatatcaccaatgtcaccaaccacaatgtcaccca 31846949  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 55382562 - 55382505
Alignment:
Q  131 gtacacttataacattgtggttgaccgatatcaccaatgttaccaaccacaatttcac 188  Q
    |||||||| ||| ||||||||||||  ||||||||||| |||||||| ||||| ||||    
T  55382562 gtacacttgtaatattgtggttgacaaatatcaccaatattaccaacaacaatgtcac 55382505  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 36273116 - 36273080
Alignment:
Q  30 ggataacacttgggtgagattgtggttggtgatattg 66  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  36273116 ggataacacttgggtgacattgtggtcggtgatattg 36273080  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 41306678 - 41306626
Alignment:
Q  131 gtacacttataacattgtggttgaccgatatcaccaatgttaccaaccacaat 183  Q
    |||||||| | ||||| ||||||||| ||||||||||||| || |||||||||    
T  41306678 gtacacttgtgacattatggttgaccaatatcaccaatgtcacaaaccacaat 41306626  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 7755341 - 7755391
Alignment:
Q  36 cacttgggtgagattgtggttggtgatattggttaaccacattgtcacaag 86  Q
    ||||||||||| |||||||||||||| |||||  ||||||| |||||||||    
T  7755341 cacttgggtgacattgtggttggtgacattggccaaccacaatgtcacaag 7755391  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 39819112 - 39819063
Alignment:
Q  142 acattgtggttgaccgatatcaccaatgttaccaaccacaatttcaccca 191  Q
    |||||||||||| || || |||||||||| |||||||||||| |||||||    
T  39819112 acattgtggttggccaatgtcaccaatgtcaccaaccacaatgtcaccca 39819063  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 28739304 - 28739342
Alignment:
Q  30 ggataacacttgggtgagattgtggttggtgatattggt 68  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  28739304 ggataatacttgggtgatattgtggttggtgatattggt 28739342  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 9379867 - 9379818
Alignment:
Q  142 acattgtggttgaccgatatcaccaatgttaccaaccacaatttcaccca 191  Q
    |||||||||||| || ||||||||||||| ||||||||| || |||||||    
T  9379867 acattgtggttggccaatatcaccaatgtcaccaaccacgatatcaccca 9379818  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 50754894 - 50754853
Alignment:
Q  27 attggataacacttgggtgagattgtggttggtgatattggt 68  Q
    ||||||||| |||||||||| |||||||||||||| ||||||    
T  50754894 attggataatacttgggtgacattgtggttggtgacattggt 50754853  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 593876 - 593824
Alignment:
Q  30 ggataacacttgggtgagattgtggttggtgatattggttaaccacattgtca 82  Q
    |||||| |||||||||| ||| | |||||| |||||||||||||||| |||||    
T  593876 ggataatacttgggtgacattatagttggtaatattggttaaccacaatgtca 593824  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 719089 - 719125
Alignment:
Q  131 gtacacttataacattgtggttgaccgatatcaccaa 167  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  719089 gtacacttataacattgtgattgaccaatatcaccaa 719125  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 10449447 - 10449503
Alignment:
Q  30 ggataacacttgggtgagattgtggttggtgatattggttaaccacattgtcacaag 86  Q
    |||||| |||||||||| |||||||||||||| ||||   ||||||| |||||||||    
T  10449447 ggataatacttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaag 10449503  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 28739466 - 28739418
Alignment:
Q  36 cacttgggtgagattgtggttggtgatattggttaaccacattgtcaca 84  Q
    ||||||||||| |||||||||||||| |||||  ||||||| |||||||    
T  28739466 cacttgggtgacattgtggttggtgacattggccaaccacaatgtcaca 28739418  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 44291146 - 44291198
Alignment:
Q  131 gtacacttataacattgtggttgaccgatatcaccaatgttaccaaccacaat 183  Q
    |||||||| | ||||||||||||||| || |||||||| | ||||||||||||    
T  44291146 gtacacttgtgacattgtggttgaccaatgtcaccaatataaccaaccacaat 44291198  T

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Target: scaffold1315 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 1816 - 1868
Alignment:
Q  34 aacacttgggtgagattgtggttggtgatattggttaaccacattgtcacaag 86  Q
    ||||||||||||| |||||||||||||| |||| | ||||||| | |||||||    
T  1816 aacacttgggtgacattgtggttggtgacattgatcaaccacaatatcacaag 1868  T

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Target: scaffold1293 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 255 - 203
Alignment:
Q  34 aacacttgggtgagattgtggttggtgatattggttaaccacattgtcacaag 86  Q
    ||||||||||||| |||||||||||||| |||| | ||||||| | |||||||    
T  255 aacacttgggtgacattgtggttggtgacattgatcaaccacaatatcacaag 203  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 26667 - 26631
Alignment:
Q  30 ggataacacttgggtgagattgtggttggtgatattg 66  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  26667 ggataacacttggatgacattgtggttggtgatattg 26631  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 7211865 - 7211913
Alignment:
Q  36 cacttgggtgagattgtggttggtgatattggttaaccacattgtcaca 84  Q
    ||||||||||| |||||||||||||| |||||  ||||||| |||||||    
T  7211865 cacttgggtgacattgtggttggtgacattggccaaccacaatgtcaca 7211913  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 17272704 - 17272752
Alignment:
Q  36 cacttgggtgagattgtggttggtgatattggttaaccacattgtcaca 84  Q
    ||||||||||| |||||||||||||| |||||  ||||||| |||||||    
T  17272704 cacttgggtgacattgtggttggtgacattggccaaccacaatgtcaca 17272752  T

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