View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_low_42 (Length: 341)
Name: NF19058_low_42
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 25928138 - 25928467
Alignment:
| Q |
1 |
ttcgtataattttgttgatggttcaacctcgtgtgtggaggtcgtttgcgggatcacaatgctttatatgtaaaatttaaatcagaattttaagccagtt |
100 |
Q |
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| T |
25928138 |
ttcgtataattttgttgatggttcaacctcgtgtgtggaggtcgtttgtgggatcacaatgcgttatatgtaaaatttaaatcagaattttaagccagtt |
25928237 |
T |
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| Q |
101 |
tataggatatat--ggagaaatgttcattgcatt----ccccaaaggatcacatttaagaaaagtgcaagagttcaagtcatatttgaaattcgaagcaa |
194 |
Q |
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| T |
25928238 |
tataggatatatatggagaaatgt-cattgcattcattccccaaaggatcacatttaagaaaagtgcaagagttcaagtcatatttgaaattcgaagcaa |
25928336 |
T |
|
| Q |
195 |
agtaaatgccaacaagtgttattacggagtcaattttagtgggctaatttactttcttnnnnnnnnnnnnngtatgatacttgttgaggaaaccaaacgt |
294 |
Q |
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| T |
25928337 |
agtaaatgccaacaagtgttattacggagtcaattttagtgggttaatttactttcttaaaaaacaaaaaagtgtgatacttgttgaggaaaccaaacgt |
25928436 |
T |
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| Q |
295 |
agtaagtttgtattgccttcaacaatatttt |
325 |
Q |
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|||| ||||||||||| |||||||||||||| |
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| T |
25928437 |
agtaggtttgtattgcgttcaacaatatttt |
25928467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 5300199 - 5300251
Alignment:
| Q |
273 |
acttgttgaggaaaccaaacgtagtaagtttgtattgccttcaacaatatttt |
325 |
Q |
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| T |
5300199 |
acttgttaaggaaaccaaaagtagtaagtttgcattgaattcaacaatatttt |
5300251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 2136412 - 2136464
Alignment:
| Q |
273 |
acttgttgaggaaaccaaacgtagtaagtttgtattgccttcaacaatatttt |
325 |
Q |
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||||||| ||||||||||| ||||| |||||||||| |||||||||||||| |
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| T |
2136412 |
acttgttaaggaaaccaaaattagtaggtttgtattgtattcaacaatatttt |
2136464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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