View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_low_46 (Length: 316)
Name: NF19058_low_46
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_low_46 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 301
Target Start/End: Original strand, 10251346 - 10251633
Alignment:
| Q |
14 |
catcatcatcaattaatccaaataaataaacttcaatgtaaccttgtcttcttggtgtacctttgtttgatgcaagcctaggtaaaagaccattatagaa |
113 |
Q |
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| T |
10251346 |
catcttcatcaattaatccaaataaataaacttcaatgtaaccttgtcttcttggtgtacctttgtttgatgcaagcctaggtaaaagaccattatagaa |
10251445 |
T |
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| Q |
114 |
tcttaatgcattttgaatatttgcatttttgtcaccatctgttggccaccctacttcaccaacaaaaattggcatgttaccaaatcctattgatttcaat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
10251446 |
tcttaatgcattttgaatatttgcatttttgtcaccatctgttggccaccctacttcaccaacaaaaattggcatgttaccaaatccaattgatttcaat |
10251545 |
T |
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| Q |
214 |
gctgagactaaagtatcaaaatttgcatcaaaaacatttgtgtacaaaattccattatcatttataggatttgatactccatcaaaaa |
301 |
Q |
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| T |
10251546 |
gctgagactaaagtatcaaaatttgcatcaaaaacatttgtgtacaaaactccattgtcatttataggatttgatactccatcaaaaa |
10251633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 46353486 - 46353431
Alignment:
| Q |
120 |
tgcattttgaatatttgcatttttgtcaccatctgttggccaccctacttcaccaa |
175 |
Q |
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| T |
46353486 |
tgcattttgaatatttgcatttttatcaccatctgttggccaaccaacttctccaa |
46353431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 22384794 - 22384754
Alignment:
| Q |
136 |
gcatttttgtcaccatctgttggccaccctacttcaccaac |
176 |
Q |
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| T |
22384794 |
gcattcttatcaccatctgttggccacccaacttcaccaac |
22384754 |
T |
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