View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_low_48 (Length: 313)
Name: NF19058_low_48
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 9081479 - 9081764
Alignment:
| Q |
17 |
aaatagaacaaatttatatttgaaaagataagatagtgggtacttattgagaatagacatgatttgttaaaccctgctacatgnnnnnnnncacaaaaga |
116 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9081479 |
aaataaaacaaatttatatttgaaaagataagatagtgggtacttattgagaatagacatgatttgttaaaccctgctacat-agaaaaaacacaaaaga |
9081577 |
T |
|
| Q |
117 |
ataaaactacgaaattgagagcatggaccattttattgagtattagattttgtatgaatataacacacgcattgatacctcttcatcaatcaagatcata |
216 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
9081578 |
ataaaactacgaaattgagagcatgggccattttattcggtattagattttgtatgaatataacacacacattgatacctcttcatcaatcaagaccata |
9081677 |
T |
|
| Q |
217 |
tctatactaagcagttcatttttcttattgatatggaaattatcccatagtctagcaatgcgcacttttagactactctcctctgtg |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
9081678 |
tctatactaagcagttcatttttcttattgatatggaaattgtcccatagtctagaaatgcgcacttttagactactctcccctgtg |
9081764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 32665656 - 32665394
Alignment:
| Q |
17 |
aaatagaacaaatttatatttgaaaagataagatagtgggtacttattgagaatagacatgatttgttaaaccctgctacatgnnnnnnnncacaaaaga |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32665656 |
aaatagaacaaatttatatttgaaaagataagatagtgggtacttattgagaatagacatgatttgttaaaccctgctacatagaaaaaaacacaaaaga |
32665557 |
T |
|
| Q |
117 |
ataaaactacgaaattgagagcatggaccattttattgagtattagattttgtatgaatataacacacgcattgatacctcttcatcaatcaagatcata |
216 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32665556 |
ataaaactacgaaattgagagcatggaccattttattcagtattagattttgtatgaatataacacacgcattgatacctcttcatcaatcaagaccata |
32665457 |
T |
|
| Q |
217 |
tctatactaagcagttcatttttcttattgatatggaaattatcccatagtctagcaatgcgca |
280 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32665456 |
tctatactaagcagttca-ttttcttattgatatggaaattgtcccatagtctagcaatgcgca |
32665394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 27597642 - 27597574
Alignment:
| Q |
235 |
tttttcttattgatatggaaattatcccatagtctagcaatgcgcacttttagactactctcctctgtg |
303 |
Q |
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||||| |||||||| |||||||| ||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
27597642 |
ttttttttattgatgtggaaattgtcccatagtctagcaatgcatacttttacactactctcctctgtg |
27597574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 6412769 - 6412979
Alignment:
| Q |
17 |
aaatagaacaaatttatatttgaaaagataagatagtgggtacttattgagaatagacatgatttgttaaaccctgctacatgnnnnnnnncacaaaaga |
116 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6412769 |
aaatagaacaaatttatatttaaaaagataagatagtggatacttattgagaatagacatgatttgttaaaccctgctacat-agaaaaaacacaaaaga |
6412867 |
T |
|
| Q |
117 |
ataaaactacgaaattgagagcatggaccattttattgagtattagattttgtatgaatataacacacgcattgatacctcttcatcaatcaagatcata |
216 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
6412868 |
ataaaactatgaaattgagagcatggaccattttattcagtattagattttgtatgaatataacacacgcattgatgcctcttcatcaatcaagaccata |
6412967 |
T |
|
| Q |
217 |
tctatactaagc |
228 |
Q |
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|||||||||||| |
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|
| T |
6412968 |
tctatactaagc |
6412979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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