View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19058_low_57 (Length: 283)

Name: NF19058_low_57
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19058_low_57
NF19058_low_57
[»] chr7 (10 HSPs)
chr7 (16-276)||(17756627-17756889)
chr7 (16-272)||(1075827-1076083)
chr7 (16-272)||(36723952-36724208)
chr7 (16-101)||(19849448-19849533)
chr7 (158-276)||(14784673-14784791)
chr7 (16-109)||(44945060-44945153)
chr7 (190-241)||(19849380-19849431)
chr7 (213-275)||(15234705-15234767)
chr7 (209-247)||(44945165-44945203)
chr7 (210-276)||(44970271-44970337)
[»] chr4 (2 HSPs)
chr4 (16-276)||(45071060-45071323)
chr4 (216-272)||(9456995-9457051)
[»] chr1 (2 HSPs)
chr1 (16-275)||(4198258-4198519)
chr1 (154-276)||(36565618-36565742)
[»] chr3 (5 HSPs)
chr3 (16-271)||(25644634-25644891)
chr3 (16-272)||(47099878-47100136)
chr3 (158-275)||(43410316-43410433)
chr3 (211-276)||(54696836-54696901)
chr3 (16-109)||(42641845-42641939)
[»] chr2 (1 HSPs)
chr2 (154-272)||(13764775-13764893)
[»] chr6 (4 HSPs)
chr6 (161-276)||(34884346-34884462)
chr6 (210-276)||(26229398-26229464)
chr6 (216-272)||(3419170-3419226)
chr6 (16-97)||(3419047-3419128)
[»] scaffold0001 (2 HSPs)
scaffold0001 (154-247)||(181684-181777)
scaffold0001 (16-101)||(181538-181623)
[»] chr5 (4 HSPs)
chr5 (16-93)||(4428821-4428898)
chr5 (196-276)||(4428718-4428798)
chr5 (213-275)||(17549366-17549428)
chr5 (16-114)||(31736817-31736913)
[»] chr8 (1 HSPs)
chr8 (209-276)||(7011428-7011495)


Alignment Details
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 276
Target Start/End: Original strand, 17756627 - 17756889
Alignment:
Q  16 aaatttcatattatgcttaatatttcaacaaatgtgtgttgttgcaatggttatgtagaccttcaatgtataaaaggttgtgtgtttgatcccttggcag 115  Q
    |||||||||||||||||| |||||| |||||||| ||||||||| | ||||||||  | |||||||||| |||| ||| ||| |||  |||||| |  ||    
T  17756627 aaatttcatattatgcttgatattttaacaaatgcgtgttgttgtagtggttatgcggtccttcaatgtgtaaagggtcgtgcgttcaatccctggatag 17756726  T
Q  116 cttcc--tttttataattcttagcaaannnnnnnnnnnnnattcaaaaaacaaggtcctggtgggtatcaaactagcatccccaggtattgaactagcaa 213  Q
    | |||  ||||||||||||||||| ||             |||||||| |||||| ||||||||||||||||||||||||||| |||||  | |||||||    
T  17756727 cctcccctttttataattcttagcgaatttttctttatttattcaaaatacaaggacctggtgggtatcaaactagcatccccgggtatcaatctagcaa 17756826  T
Q  214 tattaccaccacaccagttaacaatgttgcacatttcttgaaactatttaatatatattcttc 276  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||    
T  17756827 tattaccaccacaccagttaacaatgatgcacattttttgaaactgtttaatatatattcttc 17756889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 272
Target Start/End: Complemental strand, 1076083 - 1075827
Alignment:
Q  16 aaatttcatattatgcttaatatttcaacaaatgtgtgttgttgcaatggttatgtagaccttcaatgtataaaaggttgtgtgtttgatcccttggcag 115  Q
    ||||||||||||||| || || | ||||||| || |||||||| || ||||||||  | |||||||||| ||||| |||||||||||||||||| | ||     
T  1076083 aaatttcatattatgtttgatctatcaacaagtgcgtgttgttccagtggttatgcggtccttcaatgtgtaaaaagttgtgtgtttgatccctag-cat 1075985  T
Q  116 cttccttttt-ataattcttagcaaannnnnnnnnnnnnattcaaaaaacaaggtcctggtgggtatcaaactagcatccccaggtattgaactagcaat 214  Q
    | |||||||| |||||| ||||| ||             |||||||||||||||| || ||||||||| |||||||||||||| |  || | |  ||||     
T  1075984 cctccttttttataatttttagcgaatttttctttttttattcaaaaaacaaggttctagtgggtatcgaactagcatccccatgatttaatcatgcaaa 1075885  T
Q  215 attaccaccacaccagttaacaatgttgcacatttcttgaaactatttaatatatatt 272  Q
    ||||||||||||||||||||||||||||||||| | ||||| || |||||||||||||    
T  1075884 attaccaccacaccagttaacaatgttgcacatcttttgaatctgtttaatatatatt 1075827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 36723952 - 36724208
Alignment:
Q  16 aaatttcatattatgcttaatatttcaacaaatgtgtgttgttgcaatggttatgtagaccttcaatgtataaaaggttgtgtgtttgatcccttggca- 114  Q
    ||||||||||||||| || ||||  |||||| || |||||||| || ||||||||  | |||||||||| ||||| |||||||||||||| ||||| ||     
T  36723952 aaatttcatattatgtttgatataacaacaagtgcgtgttgttccagtggttatgcggtccttcaatgtgtaaaaagttgtgtgtttgat-ccttgacac 36724050  T
Q  115 gcttcctttttataattcttagcaaannnnnnnnnnnnnattcaaaaaacaaggtcctggtgggtatcaaactagcatccccaggtattgaactagcaat 214  Q
     || ||||||||||||| ||||| ||             |||||||||| |||||||||||||||||| |||||||||||||| |  || | |  ||||     
T  36724051 cctccctttttataatttttagcgaatttttctttttttattcaaaaaataaggtcctggtgggtatcgaactagcatccccatgatttaatcatgcaaa 36724150  T
Q  215 attaccaccacaccagttaacaatgttgcacatttcttgaaactatttaatatatatt 272  Q
    |||| |||||||||||||||||||||||||||| | ||||| || |||||||||||||    
T  36724151 attatcaccacaccagttaacaatgttgcacatcttttgaatctgtttaatatatatt 36724208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 19849533 - 19849448
Alignment:
Q  16 aaatttcatattatgcttaatatttcaacaaatgtgtgttgttgcaatggttatgtagaccttcaatgtataaaaggttgtgtgtt 101  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||     ||||||||| |||||||| |||||||    
T  19849533 aaatttcatattatgcttaatatttcaacaaatgcgtgttgttgcagtggttatgcgattcttcaatgtgtaaaaggtcgtgtgtt 19849448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 158 - 276
Target Start/End: Complemental strand, 14784791 - 14784673
Alignment:
Q  158 aaaaaacaaggtcctggtgggtatcaaactagcatccccaggtattgaactagcaatattaccaccacaccagttaacaatgttgcacatttcttgaaac 257  Q
    |||||| ||||||||| | ||  |||||| |||||||||  ||||  || |||| |||||||||||||| || ||||||| |||||||||||  ||||||    
T  14784791 aaaaaaaaaggtcctgctaggattcaaacaagcatccccgagtatcaaattagcgatattaccaccacaacaattaacaacgttgcacattttgtgaaac 14784692  T
Q  258 tatttaatatatattcttc 276  Q
    | |||||||||||||||||    
T  14784691 tgtttaatatatattcttc 14784673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 44945060 - 44945153
Alignment:
Q  16 aaatttcatattatgcttaatatttcaacaaatgtgtgttgttgcaatggttatgtagaccttcaatgtataaaaggttgtgtgtttgatccct 109  Q
    |||||||||||||||||| |||||| || |||||  |||||||||| ||||||||  | |||||||||| |||||| | ||||||| |||||||    
T  44945060 aaatttcatattatgcttgatattttaagaaatgcatgttgttgcagtggttatgcggtccttcaatgtgtaaaagatcgtgtgttcgatccct 44945153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 19849431 - 19849380
Alignment:
Q  190 catccccaggtattgaactagcaatattaccaccacaccagttaacaatgtt 241  Q
    |||||||||||||  | | |||||||||||||||||||||||||||||||||    
T  19849431 catccccaggtatcaatcaagcaatattaccaccacaccagttaacaatgtt 19849380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 15234767 - 15234705
Alignment:
Q  213 atattaccaccacaccagttaacaatgttgcacatttcttgaaactatttaatatatattctt 275  Q
    |||||||||||||| || ||||||| ||||||| |||  ||||||| ||||||||||||||||    
T  15234767 atattaccaccacaacaattaacaacgttgcacgttttgtgaaactgtttaatatatattctt 15234705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 44945165 - 44945203
Alignment:
Q  209 agcaatattaccaccacaccagttaacaatgttgcacat 247  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  44945165 agcaatattaccaccacacgagttaacaatgtagcacat 44945203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 44970271 - 44970337
Alignment:
Q  210 gcaatattaccaccacaccagttaacaatgttgcacatttcttgaaactatttaatatatattcttc 276  Q
    ||||||||| ||| ||| ||  ||||||||||| |||||| || ||| |||||||||||||||||||    
T  44970271 gcaatattatcactacatcatataacaatgttgtacatttttttaaattatttaatatatattcttc 44970337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 276
Target Start/End: Original strand, 45071060 - 45071323
Alignment:
Q  16 aaatttcatattatgcttaatatttcaacaaatgtgtgttgttgcaatggttatgtagaccttcaatgtataaaaggttgtgtgtttgatcccttggcag 115  Q
    ||||||||||||||| || ||||||||||||||| ||||||||| | |||||||| || |||||||||| |||||| |||| ||||  |||| |||| |     
T  45071060 aaatttcatattatgtttgatatttcaacaaatgggtgttgttgtagtggttatgcagtccttcaatgtgtaaaagtttgtctgttcaatcc-ttggtac 45071158  T
Q  116 cttcc---tttttataattcttagcaaannnnnnnnnnnnnattcaaaaaacaaggtcctggtgggtatcaaactagcatcccc-aggtattgaactagc 211  Q
    | |||   ||||||||||||||||||||             |||||||||||||| |||| || |||||||||||||||||||| | ||||  | | |||    
T  45071159 cctccctttttttataattcttagcaaatttttatttttttattcaaaaaacaagatcctagtaggtatcaaactagcatcccccaagtatcaatcaagc 45071258  T
Q  212 aatattaccaccacaccagttaacaatgttgcacatttcttgaaactatttaatatatattcttc 276  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45071259 aatattaccaccacaccagttaacaatgttgcacattttttgaaactatttaatatatattcttc 45071323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 272
Target Start/End: Complemental strand, 9457051 - 9456995
Alignment:
Q  216 ttaccaccacaccagttaacaatgttgcacatttcttgaaactatttaatatatatt 272  Q
    ||||||||||| |||||||||||||||||||| | ||||||||||||||||| ||||    
T  9457051 ttaccaccacaacagttaacaatgttgcacatattttgaaactatttaatatctatt 9456995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 4198258 - 4198519
Alignment:
Q  16 aaatttcatattatgcttaatatttcaacaaatgtgtgttgttgcaatggttatgtagaccttcaatgtataaaaggtt-gtgtgtttgatcccttggca 114  Q
    |||||||||||||||||  ||||||||||||||||||||||||||| | |||| |  | | |||||||| | ||||||| ||||||| ||||||| |       
T  4198258 aaatttcatattatgctgcatatttcaacaaatgtgtgttgttgcagttgttacgcggtcattcaatgtgtgaaaggtttgtgtgttcgatccctggtac 4198357  T
Q  115 gcttcctttttataattcttagcaaannnnnnnnnnnnnattcaaaaaacaaggtcctggtgggtatcaaactagcat-ccccaggtattgaactagcaa 213  Q
     || |||||| |||||||||||| ||             ||||||||||||||||||||||||||||||||||||||| ||||||||||  ||| |||||    
T  4198358 cctcccttttcataattcttagcgaatttttctttttttattcaaaaaacaaggtcctggtgggtatcaaactagcatcccccaggtatcaaacaagcaa 4198457  T
Q  214 tattaccaccacaccagttaacaatgttgcacatttcttgaaactatttaatatatattctt 275  Q
    | || |||||||||||||||||||| ||| |||||| || ||||| ||||||||||||||||    
T  4198458 ttttgccaccacaccagttaacaatattgtacattttttaaaactgtttaatatatattctt 4198519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 154 - 276
Target Start/End: Complemental strand, 36565742 - 36565618
Alignment:
Q  154 attcaaaaaacaaggtcctggtgggtatca-aactagcatcccc-aggtattgaactagcaatattaccaccacaccagttaacaatgttgcacatttct 251  Q
    |||||||||||||||||||||||||||||  ||||||||||||| ||||||  ||| |||||| || |||||||||||||||||||| ||| |||||| |    
T  36565742 attcaaaaaacaaggtcctggtgggtatcggaactagcatcccccaggtatcaaacaagcaattttgccaccacaccagttaacaatattgaacattttt 36565643  T
Q  252 tgaaactatttaatatatattcttc 276  Q
    ||||||| |||||||||||||||||    
T  36565642 tgaaactgtttaatatatattcttc 36565618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 271
Target Start/End: Original strand, 25644634 - 25644891
Alignment:
Q  16 aaatttcatattatgcttaatatttcaacaaatgtgtgttgttgcaatggttatgtagaccttcaatgtataaaaggttgtgtgtttgatcccttggcag 115  Q
    |||||||||||||||||| |||| ||||||| || |||||||| |  ||||||||| | |||| ||||||||||| |||||||||| ||||| ||||||     
T  25644634 aaatttcatattatgcttgatatatcaacaagtgcgtgttgtttcggtggttatgtggtcctttaatgtataaaatgttgtgtgttcgatcc-ttggcac 25644732  T
Q  116 c---ttcctttttataattcttagcaaannnnnnnnnnnnnattcaaaaaacaaggtcctggtgggtatcaaactagcatccccaggtattgaactagca 212  Q
    |   | || |||||||||| ||||||||             ||||||| ||||||||||||||||||||| |||||||||||||| | ||| | |  |||    
T  25644733 cccctcccattttataatttttagcaaatttttcttttttaattcaaataacaaggtcctggtgggtatcgaactagcatccccatgcattaatcatgca 25644832  T
Q  213 atattaccaccacaccagttaacaatgttgcacatttcttgaaactatttaatatatat 271  Q
    | ||||||||||||||| ||||||||||||||||| | |||||  | ||||||||||||    
T  25644833 aaattaccaccacaccacttaacaatgttgcacatattttgaatttgtttaatatatat 25644891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 47099878 - 47100136
Alignment:
Q  16 aaatttcatattatgcttaatatttcaacaaatgtgtgttgttgcaatggttatgtagaccttcaatgtataaaaggttgtgtgtttgatcccttggcag 115  Q
    ||||||||||||||| || |||| ||||||| || ||||||||  | ||||||||| | |||||||||| ||||| ||||||||||  |||||  ||||     
T  47099878 aaatttcatattatgtttgatatatcaacaagtgcgtgttgttatagtggttatgtggtccttcaatgtgtaaaaagttgtgtgttcaatcccc-ggcac 47099976  T
Q  116 cttcc---tttttataattcttagcaaannnnnnnnnnnnnattcaaaaaacaaggtcctggtgggtatcaaactagcatccccaggtattgaactagca 212  Q
    | |||   ||||||||||| ||||| ||             |||||||||||||||||||||||| |||| |||||||||||||| |  || | |  | |    
T  47099977 cctccctttttttataatttttagcgaatttttctttttttattcaaaaaacaaggtcctggtggatatcgaactagcatccccatgatttaatcatgta 47100076  T
Q  213 atattaccaccacaccagttaacaatgttgcacatttcttgaaactatttaatatatatt 272  Q
    | ||||||||||||||||||||||||||||||||| | ||||| || |||||||||||||    
T  47100077 aaattaccaccacaccagttaacaatgttgcacatcttttgaatctgtttaatatatatt 47100136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 275
Target Start/End: Original strand, 43410316 - 43410433
Alignment:
Q  158 aaaaaacaaggtcctggtgggtatcaaactagcatccccaggtattgaactagcaatattaccaccacaccagttaacaatgttgcacatttcttgaaac 257  Q
    |||||| |||||||| |||||  |||||| | |||||||| ||||  | | ||||||||||||||| || ||||| |||||||| ||||||| || |||     
T  43410316 aaaaaaaaaggtcctagtgggattcaaaccaacatccccatgtataaatcaagcaatattaccaccgcatcagtttacaatgtttcacattttttaaaat 43410415  T
Q  258 tatttaatatatattctt 275  Q
    | ||||||||||||||||    
T  43410416 tgtttaatatatattctt 43410433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 54696901 - 54696836
Alignment:
Q  211 caatattaccaccacaccagttaacaatgttgcacatttcttgaaactatttaatatatattcttc 276  Q
    |||||||||||||||| ||||  | |||||| |||||||||||||||| |||| ||||||||||||    
T  54696901 caatattaccaccacaacagtatagaatgtttcacatttcttgaaactgtttagtatatattcttc 54696836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 42641939 - 42641845
Alignment:
Q  16 aaatttcatattatgcttaatatttcaacaaatgtgtgttgttgcaatggttatgtagaccttcaatgtataaaagg-ttgtgtgtttgatccct 109  Q
    |||||| ||||||||||   ||||||||||||||||||||||| || |||||| |  | | |||||||| ||||||| ||||||||| |||||||    
T  42641939 aaattttatattatgctgcttatttcaacaaatgtgtgttgttacagtggttacgcggtcattcaatgtgtaaaaggtttgtgtgttcgatccct 42641845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 154 - 272
Target Start/End: Original strand, 13764775 - 13764893
Alignment:
Q  154 attcaaaaaacaaggtcctggtgggtatcaaactagcatccccaggtattgaactagcaatattaccaccacaccagttaacaatgttgcacatttcttg 253  Q
    |||||||| |||||||||||||||||||| |||||||||||||| |  |||| |  |||| ||||||||||||||||||||||||||||||||| | |||    
T  13764775 attcaaaatacaaggtcctggtgggtatcgaactagcatccccatgatttgatcatgcaaaattaccaccacaccagttaacaatgttgcacatcttttg 13764874  T
Q  254 aaactatttaatatatatt 272  Q
    || || |||||||||||||    
T  13764875 aatctgtttaatatatatt 13764893  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 161 - 276
Target Start/End: Complemental strand, 34884462 - 34884346
Alignment:
Q  161 aaacaaggtcctggtgggtatcaaactagcatcccc-aggtattgaactagcaatattaccaccacaccagttaacaatgttgcacatttcttgaaacta 259  Q
    |||||| ||||||||||||||| ||||||||||||| | ||||  ||| |||||| ||||||||||||||||||||||| ||| |||||| ||||||||     
T  34884462 aaacaatgtcctggtgggtatcgaactagcatcccccaagtatcaaacaagcaattttaccaccacaccagttaacaatattgaacattttttgaaactg 34884363  T
Q  260 tttaatatatattcttc 276  Q
    |||||||||||||||||    
T  34884362 tttaatatatattcttc 34884346  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 26229398 - 26229464
Alignment:
Q  210 gcaatattaccaccacaccagttaacaatgttgcacatttcttgaaactatttaatatatattcttc 276  Q
    ||||||||||||| ||||||| ||||||||||| |||| | || |||||||||||||||||||||||    
T  26229398 gcaatattaccactacaccagataacaatgttgtacatatttttaaactatttaatatatattcttc 26229464  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 3419170 - 3419226
Alignment:
Q  216 ttaccaccacaccagttaacaatgttgcacatttcttgaaactatttaatatatatt 272  Q
    |||||||||||||||||||||||||||||||| | ||||| || |||||||||||||    
T  3419170 ttaccaccacaccagttaacaatgttgcacatcttttgaatctgtttaatatatatt 3419226  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 3419047 - 3419128
Alignment:
Q  16 aaatttcatattatgcttaatatttcaacaaatgtgtgttgttgcaatggttatgtagaccttcaatgtataaaaggttgtg 97  Q
    ||||||||||||||| || |||| ||||||| || |||||||| || ||||||||  | |||||||||||||||| ||||||    
T  3419047 aaatttcatattatgtttgatatatcaacaagtgcgtgttgttccagtggttatgcggtccttcaatgtataaaaagttgtg 3419128  T

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Target: scaffold0001 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 181684 - 181777
Alignment:
Q  154 attcaaaaaacaaggtcctggtgggtatcaaactagcatccccaggtattgaactagcaatattaccaccacaccagttaacaatgttgcacat 247  Q
    ||||||||||||||||||||||||||| | |||||||||||||||| ||| | |  |||| ||||||||||||||| |||||||||||||||||    
T  181684 attcaaaaaacaaggtcctggtgggtaccgaactagcatccccaggcattaatcatgcaaaattaccaccacaccaattaacaatgttgcacat 181777  T

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Target: scaffold0001; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 181538 - 181623
Alignment:
Q  16 aaatttcatattatgcttaatatttcaacaaatgtgtgttgttgcaatggttatgtagaccttcaatgtataaaaggttgtgtgtt 101  Q
    |||||||||||||||||| |||| ||||||| |||||||||||    ||||||||| | |||| ||||||||||| ||||||||||    
T  181538 aaatttcatattatgcttgatatatcaacaagtgtgtgttgttctggtggttatgtggtcctttaatgtataaaatgttgtgtgtt 181623  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 4428898 - 4428821
Alignment:
Q  16 aaatttcatattatgcttaatatttcaacaaatgtgtgttgttgcaatggttatgtagaccttcaatgtataaaaggt 93  Q
    |||||||||||||||||  ||||||||||||||||||||||||||| |||||| |  | | |||||||| ||||||||    
T  4428898 aaatttcatattatgctgcatatttcaacaaatgtgtgttgttgcagtggttacgcggtcattcaatgtgtaaaaggt 4428821  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 276
Target Start/End: Complemental strand, 4428798 - 4428718
Alignment:
Q  196 caggtattgaactagcaatattaccaccacaccagttaacaatgttgcacatttcttgaaactatttaatatatattcttc 276  Q
    |||||||  ||| |||||| ||||||||||||||||||||||| ||| | |||| || ||||| |||||||||||||||||    
T  4428798 caggtatcaaacaagcaattttaccaccacaccagttaacaatattgaatattttttaaaactgtttaatatatattcttc 4428718  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 17549366 - 17549428
Alignment:
Q  213 atattaccaccacaccagttaacaatgttgcacatttcttgaaactatttaatatatattctt 275  Q
    |||||||||||||| || ||||||| ||||||| |||  ||||||| ||||||||||||||||    
T  17549366 atattaccaccacaacaattaacaacgttgcacgttttgtgaaactgtttaatatatattctt 17549428  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 31736913 - 31736817
Alignment:
Q  16 aaatttcatattatgcttaatatttcaacaaatgtg-tgttgttgcaatggttatgtagaccttcaatgtataaaaggttgtgtgtttgatcccttggca 114  Q
    ||||||||||||||| ||  |||||||||||||||| ||| |||| | |||||||| || || ||||||||| ||||   ||||||| ||||||||||||    
T  31736913 aaatttcatattatgattggtatttcaacaaatgtgttgtcgttgaagtggttatgcagtccctcaatgtattaaag---gtgtgttagatcccttggca 31736817  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 7011428 - 7011495
Alignment:
Q  209 agcaatattaccaccacaccagttaacaatgttgcacatttcttgaaactatttaatatatattcttc 276  Q
    ||||||||||||| |||||| ||| |||||||||||||||| || ||| | ||||| |||||||||||    
T  7011428 agcaatattaccaacacacccgtttacaatgttgcacattttttaaaattgtttaaaatatattcttc 7011495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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