View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_low_58 (Length: 282)
Name: NF19058_low_58
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 38867977 - 38867744
Alignment:
| Q |
2 |
gtgaaggaacacagaccagtcttaacaggttgggctgtaggctcaggtgaggtcactagaagagttgggccatggttatcctggtcactgaacggggagg |
101 |
Q |
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| T |
38867977 |
gtgatggaacatggacctgtcttaacaggttgggctgtaggctcaggtgaggtcactagaagagtttggccatggttatcctggtcactgaacgg--agg |
38867880 |
T |
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| Q |
102 |
gatctgcatgaggttggtttcacagtggctcaatagtgctattctttccttttgccaattgtaattaaaaaactgaaaagtaaaataatactccatattt |
201 |
Q |
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| T |
38867879 |
gatccgcatgaggttggtttcacagtggctcaatagtgctattctttccttttgccaattgtaattaaaaaactgaaaagtaaaatgatactccatattt |
38867780 |
T |
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| Q |
202 |
ctagattgaaaggggttgaatgagtgttatttgatg |
237 |
Q |
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| T |
38867779 |
ctagattgaaaggggttgaatgagtgttatttgatg |
38867744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 125 - 231
Target Start/End: Complemental strand, 38598804 - 38598698
Alignment:
| Q |
125 |
agtggctcaatagtgctattctttccttttgccaattgtaattaaaaaactgaaaagtaaaataatactccatatttctagattgaaaggggttgaatga |
224 |
Q |
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| T |
38598804 |
agtgactcaatagtgctatacttttcttttgccaattgtcattaaagaactgaaaagtgaaataatactccatattgttagattgaaaggggttgaatga |
38598705 |
T |
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| Q |
225 |
gtgttat |
231 |
Q |
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| T |
38598704 |
gtgttat |
38598698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 39953726 - 39953790
Alignment:
| Q |
164 |
aattaaaaaactgaaaagtaaaataatactccatatttctagattgaaaggggttgaatgagtgt |
228 |
Q |
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| T |
39953726 |
aattaaagaactgaaaagtgaaataatactccatattgctagattgaaaggggttgaatgagtgt |
39953790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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