View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_low_6 (Length: 616)
Name: NF19058_low_6
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 389 - 587
Target Start/End: Complemental strand, 33738450 - 33738252
Alignment:
| Q |
389 |
accatcacgaaaacgaaatctgcatatatttgttttctgccatggaatttatttttctgatttaaatgttatacaagcttcaaatttattcaatataaat |
488 |
Q |
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| T |
33738450 |
accatcacgaaaacgaaatctgcatatatttgttttctgccatggaatttatttttctgatttaaatgttatacaagcttcaaatttattcaatatagat |
33738351 |
T |
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| Q |
489 |
gattagtatttgatttcataacttgaatagtgattgttaagcagcaatgttcatttaaatttgttggttgttaggaaacaccagacacaacactgacac |
587 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
33738350 |
gattagtatttgatttcataacttgaatagtgattgttaagcagcaatgttcatttaaatttcttggttgttagaaaacaccagacacaacactgacac |
33738252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 219 - 354
Target Start/End: Complemental strand, 33738620 - 33738485
Alignment:
| Q |
219 |
aagtgaatttcgcaaccgtttaacacttaatactatagtatcaacacaacagcgccgtcgtctctccgcctactgagctcgccggagttatcatcatcgt |
318 |
Q |
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| T |
33738620 |
aagtgaatttcgcaaccgtttaacacttaatactatagtatcaactcaacagcgccgtcgtctctccgcctactgagctcgccggagttatcatcatcgt |
33738521 |
T |
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| Q |
319 |
tcattttgttatcctcaggttcgaatctatcctctc |
354 |
Q |
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| T |
33738520 |
tcattttgatatcctcaggttcgaatctatcctctc |
33738485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 33738848 - 33738740
Alignment:
| Q |
6 |
gtcgaagaatatcaacgattaagactcccctagaaggtattcttacatgtgtcagactcttcaaaatccaaaattctatcatttaaacctatttttctat |
105 |
Q |
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|||||| || |||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33738848 |
gtcgaaaaaaatcaacgattaagactcccctaaaaggtattcttacatgtgtccgcctcttcaaaatccaaaattctatcatttaaacctatttttctat |
33738749 |
T |
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| Q |
106 |
ttttcatat |
114 |
Q |
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||||||||| |
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| T |
33738748 |
ttttcatat |
33738740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 101
Target Start/End: Complemental strand, 8120188 - 8120153
Alignment:
| Q |
66 |
tcaaaatccaaaattctatcatttaaacctattttt |
101 |
Q |
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||||||||||||||||||||||||| |||||||||| |
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| T |
8120188 |
tcaaaatccaaaattctatcatttagacctattttt |
8120153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 6395431 - 6395474
Alignment:
| Q |
66 |
tcaaaatccaaaattctatcatttaaacctatttttctattttt |
109 |
Q |
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|||||||||||||||| |||||||| |||||||||| ||||||| |
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| T |
6395431 |
tcaaaatccaaaattcaatcatttagacctatttttttattttt |
6395474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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