View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_low_65 (Length: 267)
Name: NF19058_low_65
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 38074363 - 38074239
Alignment:
| Q |
16 |
aatgaaacacctctataatcaattataatccttttaaaaataaaaccaaacatatattaataatattggtattatctgttaaactagatgagacaattgt |
115 |
Q |
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| T |
38074363 |
aatgaaacacctctgtaatcaattataatccttttaaaaataaaaccaaacatatattaataatattggtattatctgttaaactagatgagacaattgt |
38074264 |
T |
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| Q |
116 |
gttttaaattgtatcaggttgttgt |
140 |
Q |
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| T |
38074263 |
gttttaaattgtaacaggttgttgt |
38074239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 164 - 259
Target Start/End: Complemental strand, 38074246 - 38074151
Alignment:
| Q |
164 |
gttgttattgttgcctttatgagtgagacaatttggtgacagagggggatggtggattgattggttcgtgaattttactgtgatgtgatgatgatg |
259 |
Q |
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| T |
38074246 |
gttgttgttattgcctttatgagtgagacaatttggtgacagtgggggatggtggattgattggttcgtgaattttactgtgatgtgatgatgatg |
38074151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 6283334 - 6283377
Alignment:
| Q |
26 |
ctctataatcaattataatccttttaaaaataaaaccaaacata |
69 |
Q |
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| T |
6283334 |
ctctataatcaattttaattattttaaaaataaaaccaaacata |
6283377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 35221989 - 35221939
Alignment:
| Q |
22 |
acacctctataatcaattataatccttttaaaaataaaaccaaacatatat |
72 |
Q |
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| T |
35221989 |
acacctcaataatcaattttaacccttttaagaatgaaaccaaacatatat |
35221939 |
T |
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