View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19058_low_69 (Length: 258)
Name: NF19058_low_69
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_low_69 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 15981145 - 15980923
Alignment:
| Q |
13 |
atcacaagcaataatacaaatcacaagcaaaaatccaacaacaaaataaagtaaactagtgtagctgtagcatcacttttgaaaatagtccaaaaaatga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15981145 |
atcacaagcaataatacaaatcacaagcaaaaatccaacaacaaaataaagtaaactagtgtagctgtagcatctcttttgaaaatagtccaaaaaatga |
15981046 |
T |
|
| Q |
113 |
tatacnnnnnnncaaagcaatcacctttgtattgatctaagttaccctctttgatcttcttcctgcaacacctataaaaaccaaaagggtattgtttcta |
212 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15981045 |
tatacaaaaaaacaaagcaatcacctttgtattgatctaagttaccctctttgatcttcttcctgcaacacctataaaaaccaaaagggtattgtttcta |
15980946 |
T |
|
| Q |
213 |
accctcaaattactcatataggt |
235 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
15980945 |
accctcaaattactcatataggt |
15980923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University