View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_low_73 (Length: 252)
Name: NF19058_low_73
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_low_73 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 42336234 - 42335985
Alignment:
| Q |
1 |
tcatctccgacaccagcccccgctccatctccttccaaccataatgcacctgctccagcaatcaatccaccggcatcatctcctcaaagatctccaccca |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||| ||||| |||||||||||||||||||||||| |
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| T |
42336234 |
tcatctccgacaccagcccccgctccatctacttccaaccataatgcacctgctccagtcaccaatccatcggcaccatctcctcaaagatctccaccca |
42336135 |
T |
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| Q |
101 |
gtccaactcaaggaaactcacctccatcggctacttcgaaaactctagccccaccgcctttgaaggggaagaaaatctttggaaagaaggtttgtatatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
42336134 |
gtccaactcaaggaaactcacctccatcggctacttcgaaaactctagccccaccaccttcgaaggggaagaaaatctttggaaagaaggtttg--tatg |
42336037 |
T |
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| Q |
201 |
gttcctccttttgttttgtccttgcaacatttaacacacacgttggttttgt |
252 |
Q |
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||||||| ||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
42336036 |
gttcctctttttgttttgtccttacaacatttaacacacaagttggttttgt |
42335985 |
T |
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