View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_low_76 (Length: 250)
Name: NF19058_low_76
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_low_76 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0756 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 38840711 - 38840477
Alignment:
| Q |
16 |
atggggacaaagtctgagccagtgataaccgaatgcaatgctagtgagaactggacaaaggtaacctttaagcctgacttggaaaagttcaaaatgacat |
115 |
Q |
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| T |
38840711 |
atggggacaaagtctgagccagtgataaccgaatgcaatgctagtgagaactggacaaaggtaacctttaagcctgacttggaaaagttcaaaatgacat |
38840612 |
T |
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| Q |
116 |
atcttgaagaggaccttgttgctttgatgaagaagcgtgtgttggatatggcagggtgccttggaaagactgttaaggttgaactcaatggcaccttgat |
215 |
Q |
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| T |
38840611 |
atcttgaagaggaccttgttgctttgatgaagaagcgtgtgttggatatggcagggtgccttggaaagactgttaaggttgaactcaatggcaccttgat |
38840512 |
T |
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| Q |
216 |
ctgttttatgtcgttccgcgattatgttgacctct |
250 |
Q |
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| T |
38840511 |
ctgttttatgtctttccgcgattatgttgacctct |
38840477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 9875851 - 9875658
Alignment:
| Q |
16 |
atggggacaaagtctgagccagtgataaccgaatgcaatgctagtgagaactggacaaaggtaacctttaagcctgacttggaaaagttcaaaatgacat |
115 |
Q |
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| T |
9875851 |
atggggaagaagtctgatccagtgataaccaaatgtaaagctaatgagaactggaccaaggtgacctttaagcctgacttggagaagtttaaaatgacct |
9875752 |
T |
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| Q |
116 |
atcttgaagaggaccttgttgctttgatgaagaagcgtgtgttggatatggcagggtgccttggaaagactgttaaggttgaactcaatggcac |
209 |
Q |
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| T |
9875751 |
atcttgaagaggacgttgttgctttgatgaaaaagcgtgtgctggacatggcagggtgccttggaaagactgttaaggttgaactcaacggcac |
9875658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0756 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0756
Description:
Target: scaffold0756; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 200
Target Start/End: Complemental strand, 3894 - 3773
Alignment:
| Q |
79 |
acctttaagcctgacttggaaaagttcaaaatgacatatcttgaagaggaccttgttgctttgatgaagaagcgtgtgttggatatggcagggtgccttg |
178 |
Q |
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| T |
3894 |
acctttaagcctgacttaaccaagtttcagatgacctgtcttgaagaggacgttgtagctttgatgaaaaagcgtgtgctggatatggcagggtgccttg |
3795 |
T |
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| Q |
179 |
gaaagactgttaaggttgaact |
200 |
Q |
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| T |
3794 |
gtgatactgttacggttgaact |
3773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 20098365 - 20098486
Alignment:
| Q |
79 |
acctttaagcctgacttggaaaagttcaaaatgacatatcttgaagaggaccttgttgctttgatgaagaagcgtgtgttggatatggcagggtgccttg |
178 |
Q |
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| T |
20098365 |
acctttaagcctgacttaaccaagtttgaaatgacctgtcttgaagaggacgttgtagctttgatgaaaaagcgtgtgctggacatggcagggtgccttg |
20098464 |
T |
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| Q |
179 |
gaaagactgttaaggttgaact |
200 |
Q |
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| T |
20098465 |
gtgatactgttacggttgaact |
20098486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 82 - 209
Target Start/End: Complemental strand, 33371937 - 33371810
Alignment:
| Q |
82 |
tttaagcctgacttggaaaagttcaaaatgacatatcttgaagaggaccttgttgctttgatgaagaagcgtgtgttggatatggcagggtgccttggaa |
181 |
Q |
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||||||||||||||||| ||||| | |||| |||||||| ||||| || | ||||||||||| |||||||||||||| ||||||| ||||||||| |
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| T |
33371937 |
tttaagcctgacttggataagtttgatatgaagaatcttgaaaaggacgttatagctttgatgaaaaagcgtgtgttggacatggcagtgtgccttggtg |
33371838 |
T |
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| Q |
182 |
agactgttaaggttgaactcaatggcac |
209 |
Q |
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| T |
33371837 |
agactgttacggttgtactcaacggcac |
33371810 |
T |
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