View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_low_8 (Length: 577)
Name: NF19058_low_8
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 569
Target Start/End: Original strand, 41717410 - 41717945
Alignment:
| Q |
18 |
aataacaacatcgaaattccacaagttaaaataccgaaaacaatacaattaacggtattttgacataatcaaagaaatctgcaatctatattgttgttaa |
117 |
Q |
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| T |
41717410 |
aataacaacatcgaaattccacaagttaaaataccgaaaacaatacaattaacggtattttgacataatcagagaaatctgcaatctatattgttgttaa |
41717509 |
T |
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| Q |
118 |
aaatatgaagtaataataaacttaccttgcaaaacatttggattttcgcttctatttatttggctggggtgtctcttaaacgacctcttctttcgcaatg |
217 |
Q |
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| T |
41717510 |
----------------taaacttaccttgcaaaacatttggattttcgcttctatttatttggctggggtgtctcttaaacgacctcttctttcgcaatg |
41717593 |
T |
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| Q |
218 |
aaggcttgagaacaaatggagatatctttgattgataactctgacaaaaaatcaaaccaactatcacgatcaaataatgagattgaactgcagtatataa |
317 |
Q |
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| T |
41717594 |
aaggcttgagaacaaatggagatatctttgattgataactctgacaaaaaatcaaaccaactatcacgatcaaataatgagattgaactgcagtatttaa |
41717693 |
T |
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| Q |
318 |
aaatatcctagagctcttccagagctcaagagactaccagatatacatcgccttaacagttcaaactaataaactagtggtttaactgaaattgaaaaag |
417 |
Q |
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| T |
41717694 |
aaatatcctagagctcttccagagttcaagagactaccagatatacatcgccttaacagttcaaactaataaactagtggtttaactgaaattgaaaaag |
41717793 |
T |
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| Q |
418 |
aaatcaaatgtctaccaacaaaatttgtccatttcgattttccaagggagagaattgcatgaggatgagcattgaaatgtttcagataaagcaagcagtg |
517 |
Q |
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| T |
41717794 |
aaatcaaatgtctaccaacaaaatttgtccatttcgattttccaagggagagaattgcatgaggatgagcattgaaatgtttcggataaagcaagcagtg |
41717893 |
T |
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| Q |
518 |
caacaatgggaaagttacctggaaaatcctaagcagtgatgaatgatgatgt |
569 |
Q |
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| T |
41717894 |
caacaatgggaaagttacctggaaaatcctaagcagtgatgaatgattatgt |
41717945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 447
Target Start/End: Original strand, 28432532 - 28432607
Alignment:
| Q |
372 |
aacagttcaaactaataaactagtggtttaactgaaattgaaaaagaaatcaaatgtctaccaacaaaatttgtcc |
447 |
Q |
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| T |
28432532 |
aacagttcaaactaacaaattggtagtttaaccgaaattgaaaaataaatcaaacgtctaccaataaaacttgtcc |
28432607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 277
Target Start/End: Original strand, 28432390 - 28432444
Alignment:
| Q |
223 |
ttgagaacaaatggagatatctttgattgataactctgacaaaaaatcaaaccaa |
277 |
Q |
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| T |
28432390 |
ttgagaacaaatgaagatatatttgattgataattctgacgacaaatcaaaccaa |
28432444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 487 - 569
Target Start/End: Original strand, 28432634 - 28432715
Alignment:
| Q |
487 |
cattgaaatgtttcagataaagcaagcagtgcaacaatgggaaagttacctggaaaatcctaagcagtgatgaatgatgatgt |
569 |
Q |
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| T |
28432634 |
cattgaaatgttcca-ataaagcaagcaatgcaataatgtgaaagttacctcaaaaatactaagcaacgatgaatgattatgt |
28432715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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