View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19058_low_81 (Length: 247)

Name: NF19058_low_81

Description: NF19058

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19058_low_81

[»] chr8 (2 HSPs)

Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 151; E-Value: 5e-80

Query Start/End: Original strand, 1 - 236

Target Start/End: Original strand, 36202917 - 36203135

Alignment:

Q	1	attgtccgccaaaagagcactgcaaaactcatcccaatccccaaaggaataatggcacaaaagttacaacaatannnnnnnatgaaaagagaaacatcaa	100	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36202917	attgtccgccataagagcactgcaaaactcatcccaatccccaaaggaataatggcacaaaagttacaacaatatttttttatgaaaagagaaacatcaa	36203016	T

Q	101	gctaaagagtctataaactaaaacatgatggcaacctagcaaggcccaaaaagactagtaagccaaaaagactactgagttattaaacttgtattccaat	200	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36203017	gctaaagagtctataaactaaaacatgatggcaacctagcaaggcc-----------------caaaaagactactgagttattaaacttgtattccaag	36203099	T

Q	201	aaatttctacaggaaaatagacaaaacatccccata	236	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36203100	aaatttctacaggaaaatagacaaaacatccccata	36203135	T

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Target: chr8; HSP #2

Raw Score: 36; E-Value: 0.00000000002

Query Start/End: Original strand, 165 - 232

Target Start/End: Original strand, 36215573 - 36215640

Alignment:

Q	165	aaaaagactactgagttattaaacttgtattccaataaatttctacaggaaaatagacaaaacatccc	232	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|
T	36215573	aaaaagactactaaattataaaacttgtattccaaggaatttctacagaaaaatggacaaaacctccc	36215640	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]