View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_low_86 (Length: 239)
Name: NF19058_low_86
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_low_86 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 10749898 - 10750122
Alignment:
| Q |
1 |
ttctgttcttcctctgcgcttttttcaaccgctgttattcaatttcaatcactcattcataattctccagacaaaggtaaaaatatcaacatgcatgcat |
100 |
Q |
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| T |
10749898 |
ttctgttcttcctctgcgcttttctcaaccgctgttattcaatttcaatcactcattcataattctccagacaaaggtaaaaatatcaacatgcatgcat |
10749997 |
T |
|
| Q |
101 |
aacctgttattacacattcctcatttcaatcnnnnnnnctttcttgttattattattctcatataatctgcannnnnnnctttcttgtattactttttca |
200 |
Q |
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| T |
10749998 |
aacctgttattacacattcctcatttcaatctttttttctttcttgttattattatcctcatataatctgcatttttttctttcttgtattactttttca |
10750097 |
T |
|
| Q |
201 |
caattctacattctcatataataac |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
10750098 |
caattctacattctcatataataac |
10750122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 23272462 - 23272382
Alignment:
| Q |
51 |
actcattcataattctccagacaaaggtaaaaatatcaacatgcatgcataacctgttattacacattcctcatttcaatc |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23272462 |
actcattcataattctccagacaaaggtaaaaatatcaacatgcattcataacctgttattacacattcctcatttcaatc |
23272382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 23272374 - 23272331
Alignment:
| Q |
180 |
ctttcttgtattactttttcacaattctacattctcatataataa |
224 |
Q |
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| T |
23272374 |
ctttcttgtattactttttcacaa-tctacattctcatataataa |
23272331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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