View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19058_low_89 (Length: 238)
Name: NF19058_low_89
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_low_89 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 37804633 - 37804396
Alignment:
| Q |
1 |
caatacagttagtaaaccgagagcctcaccaatatcaactttcataagaggttcaatccattctgtttcagcaagaacaaagcgcccttgttcgtcacaa |
100 |
Q |
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| T |
37804633 |
caataccgttagtaaaccgagagcctcaccaatatcaactttcataagaggttcaatccattctgtttcagcaagaacaaagcgcccttgttcgtcacaa |
37804534 |
T |
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| Q |
101 |
acattgatacccaccttaatatgctcatgagactgagagaatgagacatcaacattgaacttgtctgtacctaattgagcttttgaccgaactgagggtg |
200 |
Q |
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| T |
37804533 |
acattgattcccaccttaatatgctcacgagactgagagaatgagacatcaacattgaacttgtatgtacctaattgagcttttgacggaactgcgggtg |
37804434 |
T |
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| Q |
201 |
atcatacatgctgctgtaccgtggtggaaattctgtgt |
238 |
Q |
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| T |
37804433 |
atcatacatgctgctgtaccgtggtggaaattctgtgt |
37804396 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 46232105 - 46232052
Alignment:
| Q |
26 |
tcaccaatatcaactttcataagaggttcaatccattctgtttcagcaagaaca |
79 |
Q |
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| T |
46232105 |
tcaccaatatcaacttccataagagggtcaatccattctgttttagcaggaaca |
46232052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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