View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19058_low_90 (Length: 237)

Name: NF19058_low_90
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19058_low_90
NF19058_low_90
[»] chr5 (1 HSPs)
chr5 (1-221)||(17497717-17497937)
[»] chr7 (2 HSPs)
chr7 (1-210)||(14824662-14824871)
chr7 (1-210)||(15271669-15271878)


Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 17497937 - 17497717
Alignment:
Q  1 tctctctaattgatcaccttttctatttgatttttcattgcaatgtgctgaagaaaaactaacaaattgtactaatcaactgctttattttcttcaagta 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17497937 tctctctaattgatcaccttttttatttgatttttcattgcaatgtgctgaagaaaaactaacaaactgtactaatcaactgctttattttcttcaagta 17497838  T
Q  101 aatggttaaccggtaattccatgtttttattaacttctgttagttttgaattctattttctgcatgccaaaacaaggaaacaggctccttccatgatttg 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17497837 aatggttaaccggtaattccatgtttttatcaacttctgttagttttgaattctattttctgcatgccaaaacaaggaaacaggctccttccatgatttg 17497738  T
Q  201 tgttgcatagtaaccaatctc 221  Q
    |||||||||| |||| |||||    
T  17497737 tgttgcataggaaccgatctc 17497717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 14824662 - 14824871
Alignment:
Q  1 tctctctaattgatcaccttttctatttgatttttcattgcaatgtgctgaagaaaaactaacaaattgtactaatcaactgctttattttcttcaagta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14824662 tctctctaattgatcaccttttctatttgatttttcattgcaatgtgctgaagaaaaactaacaaactgtactaatcaactgctttattttcttcaagta 14824761  T
Q  101 aatggttaaccggtaattccatgtttttattaacttctgttagttttgaattctattttctgcatgccaaaacaaggaaacaggctccttccatgatttg 200  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14824762 aatggttaaccggtaattcgatgtttttatcaacttctgttagttttgaattctattttctgcatgccaaaacaaggaaacaggctccttccatgatttg 14824861  T
Q  201 tgttgcatag 210  Q
    ||||||||||    
T  14824862 tgttgcatag 14824871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 15271669 - 15271878
Alignment:
Q  1 tctctctaattgatcaccttttctatttgatttttcattgcaatgtgctgaagaaaaactaacaaattgtactaatcaactgctttattttcttcaagta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15271669 tctctctaattgatcaccttttctatttgatttttcattgcaatgtgctgaagaaaaactaacaaactgtactaatcaactgctttattttcttcaagta 15271768  T
Q  101 aatggttaaccggtaattccatgtttttattaacttctgttagttttgaattctattttctgcatgccaaaacaaggaaacaggctccttccatgatttg 200  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15271769 aatggttaaccggtaattcgatgtttttatcaacttctgttagttttgaattctattttctgcatgccaaaacaaggaaacaggctccttccatgatttg 15271868  T
Q  201 tgttgcatag 210  Q
    ||||||||||    
T  15271869 tgttgcatag 15271878  T

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