View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19058_low_92 (Length: 235)
Name: NF19058_low_92
Description: NF19058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19058_low_92 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 45987901 - 45988116
Alignment:
| Q |
17 |
acaggttgggttcataatcgatttttgtagattataagtatatcgtagtaactaaaatcgttgttgttaaatgttcaattaaaaagactgaagagttaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45987901 |
acaggttgggttcataatcgatttttgtagattataagtatatcgtagtaactaaaatcgttgttgttaaatgttcaattaaaaagactgaagagttaag |
45988000 |
T |
|
| Q |
117 |
cgagtattaataaattattctggcgcgtgtttgtttatcggttcaagtgtgaaaaatcaactaactaattggagtactaattaattgaagcagtttgctt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45988001 |
cgagtattaataaattattctggcgcgtgtttgtttatcggttcaagtgtgaaaaatcaactaactaattggagtactaattaattgaagcagtttgctt |
45988100 |
T |
|
| Q |
217 |
taatcgcttctgtgct |
232 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
45988101 |
taatcgcttctgtgct |
45988116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University