View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19059_high_2 (Length: 263)

Name: NF19059_high_2
Description: NF19059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19059_high_2
NF19059_high_2
[»] chr4 (3 HSPs)
chr4 (114-250)||(37737217-37737354)
chr4 (84-114)||(25055108-25055138)
chr4 (84-113)||(34941502-34941531)
[»] chr2 (3 HSPs)
chr2 (1-86)||(127655-127740)
chr2 (1-76)||(127088-127163)
chr2 (84-113)||(127754-127783)
[»] chr7 (5 HSPs)
chr7 (1-86)||(46491059-46491144)
chr7 (1-76)||(46491608-46491683)
chr7 (201-254)||(40682543-40682597)
chr7 (84-115)||(17114143-17114174)
chr7 (85-115)||(36611514-36611544)
[»] chr5 (7 HSPs)
chr5 (1-86)||(2028967-2029052)
chr5 (1-76)||(2028390-2028465)
chr5 (84-114)||(27345938-27345968)
chr5 (84-114)||(40372179-40372209)
chr5 (84-113)||(29594906-29594935)
chr5 (85-113)||(24565573-24565601)
chr5 (85-113)||(24606609-24606637)
[»] chr6 (1 HSPs)
chr6 (18-69)||(29333513-29333564)
[»] chr3 (4 HSPs)
chr3 (84-115)||(20807935-20807966)
chr3 (1-74)||(2226620-2226693)
chr3 (84-113)||(49350289-49350318)
chr3 (84-112)||(54308454-54308482)
[»] chr1 (5 HSPs)
chr1 (84-115)||(16449553-16449584)
chr1 (84-115)||(16459127-16459158)
chr1 (1-74)||(16449610-16449682)
chr1 (1-74)||(16459184-16459256)
chr1 (84-113)||(26240890-26240919)
[»] chr8 (1 HSPs)
chr8 (84-122)||(5434023-5434061)


Alignment Details
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 114 - 250
Target Start/End: Original strand, 37737217 - 37737354
Alignment:
Q  114 atgttattcattaagaaatatttcattttttctgtcgtctaattaaactctgtcacatctttaatgaatatcatcaataaaaatgacccgttcgatgtct 213  Q
    ||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37737217 atgttattcattaagaaatattttattttttctgtcgccgaattaaactctgtcacatctttaatgaatatcatcaataaaaatgacccgttcgatgtct 37737316  T
Q  214 caaatcattttactcagttca-ttttggtggcggtgga 250  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  37737317 caaatcattttactcagttcatttttggtggcggtgga 37737354  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 114
Target Start/End: Complemental strand, 25055138 - 25055108
Alignment:
Q  84 cttaattgaaccctcaccctagaatccacca 114  Q
    |||||||||||||||||||||||||||||||    
T  25055138 cttaattgaaccctcaccctagaatccacca 25055108  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 113
Target Start/End: Complemental strand, 34941531 - 34941502
Alignment:
Q  84 cttaattgaaccctcaccctagaatccacc 113  Q
    ||||||||||||||||||||||||||||||    
T  34941531 cttaattgaaccctcaccctagaatccacc 34941502  T

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Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 127655 - 127740
Alignment:
Q  1 gtgtgtggaaaaagatgaatgttctcatatttattttcaaataatgtggaccattgattcaatcaaatggtgttttatttgtgctt 86  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  127655 gtgtgtggaaaaagatggatgttctcatatttattttcaaataatgtggaccattgattcaatcaaatggtgttttatttgtgctt 127740  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 127163 - 127088
Alignment:
Q  1 gtgtgtggaaaaagatgaatgttctcatatttattttcaaataatgtggaccattgattcaatcaaatggtgtttt 76  Q
    ||||||||||| |  | |||||||| || |||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  127163 gtgtgtggaaagaactaaatgttcttatttttattttcaaataatttggaccattgatttaatcaaatggtatttt 127088  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 113
Target Start/End: Original strand, 127754 - 127783
Alignment:
Q  84 cttaattgaaccctcaccctagaatccacc 113  Q
    ||||||||||||||||||||||||||||||    
T  127754 cttaattgaaccctcaccctagaatccacc 127783  T

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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 46491144 - 46491059
Alignment:
Q  1 gtgtgtggaaaaagatgaatgttctcatatttattttcaaataatgtggaccattgattcaatcaaatggtgttttatttgtgctt 86  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||||    
T  46491144 gtgtgtggaaaaagatggatgttctcatatttattttcaaataatgtggaccattgagttaattaaatgatgttttatttgtgctt 46491059  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 46491608 - 46491683
Alignment:
Q  1 gtgtgtggaaaaagatgaatgttctcatatttattttcaaataatgtggaccattgattcaatcaaatggtgtttt 76  Q
    ||||||||||| |  | |||||||| || |||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  46491608 gtgtgtggaaagaactaaatgttcttatttttattttcaaataatttggaccattgatttaatcaaatggtatttt 46491683  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 40682543 - 40682597
Alignment:
Q  201 ccgttcgatgtctcaaatcattttactcagttca-ttttggtggcggtggatctc 254  Q
    ||||||||||||||| |||||| ||||||||||| |||||||||||| |||||||    
T  40682543 ccgttcgatgtctcagatcattatactcagttcatttttggtggcggaggatctc 40682597  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 115
Target Start/End: Complemental strand, 17114174 - 17114143
Alignment:
Q  84 cttaattgaaccctcaccctagaatccaccat 115  Q
    ||||||||||||||||||||||||||||||||    
T  17114174 cttaattgaaccctcaccctagaatccaccat 17114143  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 36611514 - 36611544
Alignment:
Q  85 ttaattgaaccctcaccctagaatccaccat 115  Q
    |||||||||||||||||||||||||||||||    
T  36611514 ttaattgaaccctcaccctagaatccaccat 36611544  T

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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 2028967 - 2029052
Alignment:
Q  1 gtgtgtggaaaaagatgaatgttctcatatttattttcaaataatgtggaccattgattcaatcaaatggtgttttatttgtgctt 86  Q
    ||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  2028967 gtgtgtgtaaaaagatggatgttctcctatttattttcaaataatgtggaccattgattcaattaaatgttgttttatttgtgctt 2029052  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 2028465 - 2028390
Alignment:
Q  1 gtgtgtggaaaaagatgaatgttctcatatttattttcaaataatgtggaccattgattcaatcaaatggtgtttt 76  Q
    ||||||||||| |  | |||||||| || |||||||||||||||| ||||||| | ||| ||||||||||||||||    
T  2028465 gtgtgtggaaagaactaaatgttcttatttttattttcaaataatttggaccaataatttaatcaaatggtgtttt 2028390  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 114
Target Start/End: Original strand, 27345938 - 27345968
Alignment:
Q  84 cttaattgaaccctcaccctagaatccacca 114  Q
    |||||||||||||||||||||||||||||||    
T  27345938 cttaattgaaccctcaccctagaatccacca 27345968  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 114
Target Start/End: Original strand, 40372179 - 40372209
Alignment:
Q  84 cttaattgaaccctcaccctagaatccacca 114  Q
    |||||||||||||||||||||||||||||||    
T  40372179 cttaattgaaccctcaccctagaatccacca 40372209  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 113
Target Start/End: Complemental strand, 29594935 - 29594906
Alignment:
Q  84 cttaattgaaccctcaccctagaatccacc 113  Q
    ||||||||||||||||||||||||||||||    
T  29594935 cttaattgaaccctcaccctagaatccacc 29594906  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 113
Target Start/End: Complemental strand, 24565601 - 24565573
Alignment:
Q  85 ttaattgaaccctcaccctagaatccacc 113  Q
    |||||||||||||||||||||||||||||    
T  24565601 ttaattgaaccctcaccctagaatccacc 24565573  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 113
Target Start/End: Complemental strand, 24606637 - 24606609
Alignment:
Q  85 ttaattgaaccctcaccctagaatccacc 113  Q
    |||||||||||||||||||||||||||||    
T  24606637 ttaattgaaccctcaccctagaatccacc 24606609  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 29333564 - 29333513
Alignment:
Q  18 aatgttctcatatttattttcaaataatgtggaccattgattcaatcaaatg 69  Q
    |||||||| ||||||||||||||||||| |||||||||||||| ||| ||||    
T  29333564 aatgttcttatatttattttcaaataatttggaccattgattcgatctaatg 29333513  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 115
Target Start/End: Complemental strand, 20807966 - 20807935
Alignment:
Q  84 cttaattgaaccctcaccctagaatccaccat 115  Q
    ||||||||||||||||||||||||||||||||    
T  20807966 cttaattgaaccctcaccctagaatccaccat 20807935  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 2226620 - 2226693
Alignment:
Q  1 gtgtgtggaaaaaga-tgaatgttctcatatttattttcaaataatgtggaccattgattcaatcaaatggtgtt 74  Q
    |||||||||||| || | ||||||||||||||| | || ||| ||| | ||||||||||||||||||||||||||    
T  2226620 gtgtgtggaaaaggaataaatgttctcatatttttctt-aaacaatcttgaccattgattcaatcaaatggtgtt 2226693  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 113
Target Start/End: Original strand, 49350289 - 49350318
Alignment:
Q  84 cttaattgaaccctcaccctagaatccacc 113  Q
    ||||||||||||||||||||||||||||||    
T  49350289 cttaattgaaccctcaccctagaatccacc 49350318  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 112
Target Start/End: Complemental strand, 54308482 - 54308454
Alignment:
Q  84 cttaattgaaccctcaccctagaatccac 112  Q
    |||||||||||||||||||||||||||||    
T  54308482 cttaattgaaccctcaccctagaatccac 54308454  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 115
Target Start/End: Complemental strand, 16449584 - 16449553
Alignment:
Q  84 cttaattgaaccctcaccctagaatccaccat 115  Q
    ||||||||||||||||||||||||||||||||    
T  16449584 cttaattgaaccctcaccctagaatccaccat 16449553  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 115
Target Start/End: Complemental strand, 16459158 - 16459127
Alignment:
Q  84 cttaattgaaccctcaccctagaatccaccat 115  Q
    ||||||||||||||||||||||||||||||||    
T  16459158 cttaattgaaccctcaccctagaatccaccat 16459127  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 16449682 - 16449610
Alignment:
Q  1 gtgtgtggaaaaagatgaatgttctcatatttattttcaaataatgtggaccattgattcaatcaaatggtgtt 74  Q
    |||||||||||   || ||||||||||||||| | || ||| ||| | ||||||||||||||||||||||||||    
T  16449682 gtgtgtggaaaggaataaatgttctcatatttttctt-aaacaatcttgaccattgattcaatcaaatggtgtt 16449610  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 16459256 - 16459184
Alignment:
Q  1 gtgtgtggaaaaagatgaatgttctcatatttattttcaaataatgtggaccattgattcaatcaaatggtgtt 74  Q
    |||||||||||   || ||||||||||||||| | || ||| ||| | ||||||||||||||||||||||||||    
T  16459256 gtgtgtggaaaggaataaatgttctcatatttttctt-aaacaatcttgaccattgattcaatcaaatggtgtt 16459184  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 113
Target Start/End: Original strand, 26240890 - 26240919
Alignment:
Q  84 cttaattgaaccctcaccctagaatccacc 113  Q
    ||||||||||||||||||||||||||||||    
T  26240890 cttaattgaaccctcaccctagaatccacc 26240919  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 122
Target Start/End: Complemental strand, 5434061 - 5434023
Alignment:
Q  84 cttaattgaaccctcaccctagaatccaccatgttattc 122  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  5434061 cttaattggaccctcaccctagaatccaccatcttattc 5434023  T

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