View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19059_high_4 (Length: 240)
Name: NF19059_high_4
Description: NF19059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19059_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 127522 - 127298
Alignment:
| Q |
1 |
caatttccatcatttaacaa-caataacacatgattataatcgaattttggatggtggtaccaaaccaatccaagtcgaaagtcttttaatgttcattca |
99 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
127522 |
caatttccatcatttaacaaacaataacacatgattataatcgaattttggatggtggtaccaaaccaatccaagtcgaaagtcctttaacgttcattca |
127423 |
T |
|
| Q |
100 |
atcaaatagattgcaacttctctgttcatagtagttatggaaatggaaatttaattaagtggttggtgaaatttaaacctctattctacctttgccatta |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
127422 |
atcaaatagattgcaacttctctgttcatagtagttatagaaatggaaatttaattaagtggttggtgaaatttaaacctctattctacctttgccatta |
127323 |
T |
|
| Q |
200 |
aacccagtaaaaaataacatataaac |
225 |
Q |
| |
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|||||||||||||| ||||||||||| |
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| T |
127322 |
aacccagtaaaaaa-aacatataaac |
127298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 46491251 - 46491476
Alignment:
| Q |
1 |
caatttccatcatttaacaa-caataacacatgattataatcgaattttggatggtggtaccaaaccaatccaagtcgaaagtcttttaatgttcattca |
99 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
46491251 |
caatttccatcatttaacaaacaataacacatgattataattgaattttggatgctggtaccaaaccaatccaagtcgaaagtccgttaacgttcattca |
46491350 |
T |
|
| Q |
100 |
atcaaatagattgcaacttctctgttcatagtagttatggaaatggaaatttaattaagtggttggtgaaatttaaacctctattctacctttgccatta |
199 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
46491351 |
atcaaatagattgcaacttctatgttcatagttgttatggaaatggaaatttaattaagtggttggtggaatttaaacctctattctacctttgctatta |
46491450 |
T |
|
| Q |
200 |
aacccagtaaaaaataacatataaac |
225 |
Q |
| |
|
||||||||||||||||| |||||||| |
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| T |
46491451 |
aacccagtaaaaaataatatataaac |
46491476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 10590646 - 10590579
Alignment:
| Q |
139 |
gaaatggaaatttaatt-aagtggttggtgaaatttaaacctctattctacctttgccattaaaccca |
205 |
Q |
| |
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||||||||||||||||| ||| | ||||| ||||||||||| |||||||||||||| |||||||||| |
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| T |
10590646 |
gaaatggaaatttaattcaagcgattggtcaaatttaaaccactattctacctttgttattaaaccca |
10590579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 2028843 - 2028619
Alignment:
| Q |
1 |
caatttccatcatttaacaa-caataacacatgattataatcgaattttggatggtggtaccaaaccaatccaagtcgaaagtcttttaatgttcattca |
99 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
2028843 |
caatttccatcatttaacaaacaataacacatgattataatcgaatttcggatggtggtaccaaaccaatccaagtcgaaagcccgttaatgttcattca |
2028744 |
T |
|
| Q |
100 |
atcaaatagattgcaacttctctgttcatagtagttatggaaatggaaatttaattaagtggttggtgaaatttaaacctctattctacctttgccatta |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||| ||||| ||||| |||||| |||| ||||||||| | |||| |
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| T |
2028743 |
atcaaatagattgcaacttctctgttcataattgttacggaaatggaaatttaattaagcggttgatgaaagttaaacatctagtctaccttt-ctatta |
2028645 |
T |
|
| Q |
200 |
aacccagtaaaaaataacatataaac |
225 |
Q |
| |
|
|||||| |||||||||| |||||||| |
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| T |
2028644 |
aacccaataaaaaataagatataaac |
2028619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 202940 - 202860
Alignment:
| Q |
136 |
atggaaatggaaatttaatt--aagtggttggtgaaatttaaacctctattctacctttgccattaaacccagtaaaaaat |
214 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||| |||||||||| |||||||| |
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| T |
202940 |
atggaaatggaaatttaattttaagtggttggtgaattttatacctctattctacctttgctattaaacccaataaaaaat |
202860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 317777 - 317697
Alignment:
| Q |
136 |
atggaaatggaaatttaatt--aagtggttggtgaaatttaaacctctattctacctttgccattaaacccagtaaaaaat |
214 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||| |||||||||| |||||||| |
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| T |
317777 |
atggaaatggaaatttaattttaagtggttggtgaattttatacctctattctacctttgctattaaacccaataaaaaat |
317697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 16449924 - 16449845
Alignment:
| Q |
136 |
atggaaatggaaatttaatt--aagtggttggtgaaatttaaacctctattctacctttgccattaaacccagtaaaaaa |
213 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||| |||||||||| ||||||| |
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| T |
16449924 |
atggaaatggaaatttaattttaagtggttggtgaattttatacctctattctacctttgctattaaacccaataaaaaa |
16449845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 16459499 - 16459428
Alignment:
| Q |
136 |
atggaaatggaaatttaatt--aagtggttggtgaaatttaaacctctattctacctttgccattaaaccca |
205 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||| |||||||||| |
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|
| T |
16459499 |
atggaaatggaaatttaattttaagtggttggtgaattttatacctctattctacctttgctattaaaccca |
16459428 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 205
Target Start/End: Complemental strand, 19930644 - 19930532
Alignment:
| Q |
92 |
ttcattcaatcaaatagattgcaacttctctgttcatagtagttatggaaatggaaatttaattaagtggttggtgaaatttaaacctctattctacctt |
191 |
Q |
| |
|
||||| |||||||||| |||||| ||||||| ||||||| || |||||||||||||||||||| | | ||||| ||||||||||||||||| || ||| |
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|
| T |
19930644 |
ttcatacaatcaaataaattgcatcttctcttgtcatagtggtaatggaaatggaaatttaattca-agcttggtcaaatttaaacctctattttatctt |
19930546 |
T |
|
| Q |
192 |
tgccattaaaccca |
205 |
Q |
| |
|
|| |||||||||| |
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|
| T |
19930545 |
agctattaaaccca |
19930532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 35897392 - 35897290
Alignment:
| Q |
93 |
tcattcaatcaaatagattgcaacttctctgttcatagtagttatggaaatggaaatttaatt-----aagtggttggtgaaatttaaacctctattcta |
187 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||||| || |||||||||||||||||||| ||| ||| | |||||||||||||||||||| |
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| T |
35897392 |
tcattcaatcaaataaattgc---ttctctagtcatagtggtaatggaaatggaaatttaattcaatcaagcagttcttcaaatttaaacctctattcta |
35897296 |
T |
|
| Q |
188 |
cctttg |
193 |
Q |
| |
|
|||||| |
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|
| T |
35897295 |
cctttg |
35897290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 2226378 - 2226457
Alignment:
| Q |
136 |
atggaaatggaaatttaatt--aagtggttggtgaaatttaaacctctattctacctttgccattaaacccagtaaaaaa |
213 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||| |||||||| |||||||||| |||||||||| ||||||| |
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|
| T |
2226378 |
atggaaatggaaatttaattttaagtggttggtgaattttatacctctatcctacctttgctattaaacccaataaaaaa |
2226457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 6254307 - 6254237
Alignment:
| Q |
125 |
tcatagtagttatggaaatggaaatttaatt-aagtggttggtgaaatttaaacctctattctacctttgc |
194 |
Q |
| |
|
||||||| || |||||||||||||||||||| | | ||||||| |||||||||||| ||||| ||| |||| |
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| T |
6254307 |
tcatagttgtaatggaaatggaaatttaattcaggcggttggtcaaatttaaacctttattccaccgttgc |
6254237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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