View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19059_low_1 (Length: 292)

Name: NF19059_low_1
Description: NF19059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19059_low_1
NF19059_low_1
[»] chr1 (6 HSPs)
chr1 (4-276)||(37865319-37865590)
chr1 (99-226)||(18638979-18639106)
chr1 (99-230)||(35814477-35814608)
chr1 (127-245)||(46939959-46940076)
chr1 (201-245)||(32556551-32556595)
chr1 (135-171)||(51474000-51474036)
[»] chr5 (6 HSPs)
chr5 (128-215)||(22017651-22017737)
chr5 (135-245)||(40491688-40491796)
chr5 (99-246)||(18401223-18401369)
chr5 (169-251)||(36183330-36183411)
chr5 (149-241)||(8217121-8217211)
chr5 (208-260)||(19882803-19882855)
[»] chr8 (7 HSPs)
chr8 (99-245)||(27157628-27157772)
chr8 (108-245)||(37507549-37507684)
chr8 (130-217)||(7632694-7632780)
chr8 (136-250)||(40506621-40506734)
chr8 (99-218)||(4656532-4656650)
chr8 (160-226)||(40899656-40899721)
chr8 (176-228)||(9045712-9045764)
[»] chr7 (10 HSPs)
chr7 (127-260)||(35356354-35356484)
chr7 (100-246)||(3255083-3255228)
chr7 (141-244)||(22713417-22713518)
chr7 (128-191)||(40172484-40172546)
chr7 (208-250)||(48392394-48392436)
chr7 (128-225)||(17115915-17116011)
chr7 (176-245)||(44453610-44453679)
chr7 (128-245)||(35424866-35424981)
chr7 (176-245)||(40256820-40256889)
chr7 (128-168)||(36645842-36645882)
[»] chr2 (5 HSPs)
chr2 (99-245)||(13019603-13019748)
chr2 (127-224)||(43050146-43050241)
chr2 (130-216)||(38308061-38308146)
chr2 (127-226)||(24510926-24511023)
chr2 (175-227)||(13378425-13378477)
[»] chr6 (13 HSPs)
chr6 (128-244)||(31596513-31596628)
chr6 (127-227)||(9929325-9929423)
chr6 (99-226)||(29389116-29389242)
chr6 (99-245)||(33450816-33450962)
chr6 (105-205)||(30525782-30525881)
chr6 (107-226)||(989518-989635)
chr6 (141-248)||(29263808-29263914)
chr6 (135-245)||(18075514-18075622)
chr6 (207-244)||(6542050-6542087)
chr6 (176-249)||(32826713-32826786)
chr6 (175-224)||(33148311-33148360)
chr6 (169-245)||(33240879-33240953)
chr6 (208-244)||(6355775-6355811)
[»] chr3 (12 HSPs)
chr3 (99-244)||(1750080-1750224)
chr3 (99-227)||(31219199-31219324)
chr3 (127-246)||(22318197-22318314)
chr3 (90-188)||(53852034-53852130)
chr3 (99-245)||(26665430-26665575)
chr3 (127-193)||(42110948-42111013)
chr3 (99-188)||(15462091-15462179)
chr3 (208-260)||(42088016-42088068)
chr3 (160-259)||(51715009-51715106)
chr3 (172-225)||(20704961-20705014)
chr3 (99-132)||(33513453-33513486)
chr3 (200-264)||(30670897-30670961)
[»] scaffold0110 (1 HSPs)
scaffold0110 (130-204)||(6459-6532)
[»] scaffold0071 (1 HSPs)
scaffold0071 (99-188)||(13-101)
[»] chr4 (5 HSPs)
chr4 (140-225)||(53689037-53689121)
chr4 (173-249)||(38303261-38303337)
chr4 (130-188)||(41945199-41945255)
chr4 (136-259)||(33086858-33086976)
chr4 (100-188)||(7257525-7257612)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 4 - 276
Target Start/End: Original strand, 37865319 - 37865590
Alignment:
Q  4 atcttgtatatactctgatactattttacaagttgggttgggtctaactcaaatattgggcttgattcgtgaggacaaattgtgaggaccgcatgttttt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37865319 atcttgtatatactctgatactattttacaagttgggttgggtctaactcaaatattgggcttgattcgtgaggataaattgtgaggaccgcatgttttt 37865418  T
Q  104 ccaccctatgagcttcttgtgcaccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcatt 203  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||  ||||    
T  37865419 ccaccctatgagcttcttgcttaccctatgcagttcggattatagaatctgaacgacataaacacccccat-aaaacctccaaaaacacgctgagacatt 37865517  T
Q  204 tcaaattttaaaatccgaataggacacacgagaaactcatagaatgagtaaagtaacagtcaattgtgagtgg 276  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37865518 tcaaattttaaaatccgaatagggcacatgagaaactcatagaatgagtaaagtaacagtcaattgtgagtgg 37865590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 226
Target Start/End: Original strand, 18638979 - 18639106
Alignment:
Q  99 tttttccaccctatgagcttcttgtgcaccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacct-ccaaaaacacgctga 197  Q
    ||||||||  ||||||| |||| |||||||||||||||||| ||||||| ||| |||| | ||||| || ||||||||||| || | ||||| |   |||    
T  18638979 tttttccattctatgagtttctcgtgcaccctatgcagttcagattataaaatttgaacggcataagca-ccccataaaaatctacaaaaaatatattga 18639077  T
Q  198 agcatttcaaattttaaaatccgaatagg 226  Q
    |  ||||| ||||||||||||||||||||    
T  18639078 aatatttcgaattttaaaatccgaatagg 18639106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 230
Target Start/End: Original strand, 35814477 - 35814608
Alignment:
Q  99 tttttccaccctatgagcttcttgtgcaccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaa 198  Q
    |||||| |||||||||| |||| | ||  |||||||||||| |||| || |||||||  |||||||| ||   |||||| |||| |||||||||| | ||    
T  35814477 tttttctaccctatgagtttctcgcgcgtcctatgcagttcagattttataatctgatcgacataaatacattcataaacaccttcaaaaacacgttaaa 35814576  T
Q  199 gcatttcaaattttaaaatccgaataggacac 230  Q
     |||||   |||||| |||||||||| |||||    
T  35814577 acattttggattttagaatccgaataagacac 35814608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 245
Target Start/End: Complemental strand, 46940076 - 46939959
Alignment:
Q  127 ccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaatagg 226  Q
    |||||| ||||||||||||||||||| |||  |||||||||   | ||||| |||| ||||||||   |||| ||||||| |||||| ||| ||||||||    
T  46940076 ccctatacagttcggattatagaatccgaacaacataaaca-atctataaagaccttcaaaaacatattgaaacatttcagattttagaattcgaatagg 46939978  T
Q  227 acacacgagaaactcatag 245  Q
    |  ||| ||||| ||||||    
T  46939977 atccacaagaaattcatag 46939959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 32556551 - 32556595
Alignment:
Q  201 atttcaaattttaaaatccgaataggacacacgagaaactcatag 245  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  32556551 atttcagattttaaaatccgaataggacgtgcgagaaactcatag 32556595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 51474000 - 51474036
Alignment:
Q  135 agttcggattatagaatctgaatgacataaacacccc 171  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  51474000 agttcggattatagaatccgaatgacgtaaacacccc 51474036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 22017737 - 22017651
Alignment:
Q  128 cctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcatttcaaattttaaa 215  Q
    ||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||| || |||| ||||||| ||||||||    
T  22017737 cctatgcagttcggattatagaatccgaatggcataaaca-ccccataaaaacctccaaaaacgcgttgaaacatttcagattttaaa 22017651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 245
Target Start/End: Complemental strand, 40491796 - 40491688
Alignment:
Q  135 agttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaataggacacacga 234  Q
    |||| |||||||||||||| || | |||||||||| | ||||||||||||||||||||| |||| |||||   |||||| ||||| |||||| |||| ||    
T  40491796 agtttggattatagaatctaaacggcataaacacctc-ataaaaacctccaaaaacacgttgaaacattttggattttagaatccaaatagg-cacaaga 40491699  T
Q  235 gaaactcatag 245  Q
    |||||| ||||    
T  40491698 gaaactaatag 40491688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 246
Target Start/End: Complemental strand, 18401369 - 18401223
Alignment:
Q  99 tttttccaccctatgagcttcttgtgcaccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaa 198  Q
    |||||||| | |||||| |||| ||||   |||||||||||||| ||||||||   ||   |||||||||| | ||| | ||||||||||||||| ||||    
T  18401369 tttttccatcttatgagtttctcgtgcgttctatgcagttcggaatatagaattcaaaaagcataaacacctc-atacagacctccaaaaacacgttgaa 18401271  T
Q  199 gcatttcaaattttaaaatccgaataggacacacgagaaactcataga 246  Q
     ||||||| ||| || |||| |||||| |||| ||| |||||||||||    
T  18401270 acatttcagattctataatctgaatagaacacgcgataaactcataga 18401223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 36183411 - 36183330
Alignment:
Q  169 ccccataaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaataggacacacgagaaactcatagaatgag 251  Q
    ||||||||||||||||||||  | | |||| ||||||  |||||| |||||||||| | | |||||||||||||||| |||||    
T  36183411 ccccataaaaacctccaaaat-atgttgaaacatttcggattttagaatccgaatatggcgcacgagaaactcataggatgag 36183330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 8217211 - 8217121
Alignment:
Q  149 aatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaataggacacacgagaaactc 241  Q
    ||||| ||||||||||||| ||||||||||| || |||||||||| | || ||||||| |||||| |||  ||||||| | | ||||||||||    
T  8217211 aatctaaatgacataaaca-ccccataaaaatct-caaaaacacgttaaaacatttcagattttagaatttgaatagggcgcgcgagaaactc 8217121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 19882855 - 19882803
Alignment:
Q  208 attttaaaatccgaataggacacacgagaaactcatagaatgagtaaagtaac 260  Q
    |||| |||||||||||| | |||  ||||||||||||||||||| ||||||||    
T  19882855 atttaaaaatccgaataaggcacgtgagaaactcatagaatgagaaaagtaac 19882803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 99 - 245
Target Start/End: Original strand, 27157628 - 27157772
Alignment:
Q  99 tttttccaccctatgagcttcttgtgcaccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaa 198  Q
    |||| ||||||||| || || | |||| ||||||||| |||||||||||||||| ||||| |||||| | |||||| |||| |||||||| |||| ||||    
T  27157628 ttttcccaccctatcagtttatcgtgcgccctatgcatttcggattatagaatccgaatggcataaata-ccccat-aaaatctccaaaaccacgttgaa 27157725  T
Q  199 gcatttcaaattttaaaatccgaataggacacacgagaaactcatag 245  Q
      | |||  |||||| ||||||||||| || ||||||||||||||||    
T  27157726 ataattcggattttagaatccgaatagcacgcacgagaaactcatag 27157772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 245
Target Start/End: Complemental strand, 37507684 - 37507549
Alignment:
Q  108 cctatgagcttcttgtgcaccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcatttcaa 207  Q
    |||||||| |||| ||||  |||||||| || || |||||||||||||| |||||||| | |||||||||||||||| |||||||| |||| ||||||      
T  37507684 cctatgagtttctcgtgcttcctatgcaatttggtttatagaatctgaacgacataaata-ccccataaaaacctcc-aaaacacgttgaaacatttcgg 37507587  T
Q  208 attttaaaatccgaataggacacacgagaaactcatag 245  Q
    |||||| ||| |||||||| | | | ||||||||||||    
T  37507586 attttagaattcgaatagggcgcgcaagaaactcatag 37507549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 7632780 - 7632694
Alignment:
Q  130 tatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcatttcaaattttaaaat 217  Q
    |||||| |||| ||||||||||||||| |||||||||| ||| |||||||||| |||||| ||| ||||  |||||||||||||||||    
T  7632780 tatgcaattcgaattatagaatctgaacgacataaaca-cccgataaaaaccttcaaaaatacgttgaaatatttcaaattttaaaat 7632694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 250
Target Start/End: Complemental strand, 40506734 - 40506621
Alignment:
Q  136 gttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaataggacacacgag 235  Q
    |||| |||||| || ||||||||| |||||||| || |||||||||||||||| |||| ||||  |||||  |||||| ||||| |||||| || |||||    
T  40506734 gttccgattatggactctgaatgatataaacactcc-ataaaaacctccaaaatcacgttgaaatatttcggattttacaatccaaatagggcatacgag 40506636  T
Q  236 aaactcatagaatga 250  Q
    |||||||||| ||||    
T  40506635 aaactcataggatga 40506621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 218
Target Start/End: Original strand, 4656532 - 4656650
Alignment:
Q  99 tttttccaccctatgagcttcttgtgcaccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaa 198  Q
    |||||| ||||||||||||||| |  ||  |||||||||| ||||||||||||| ||| |||||||| | |  |||||||||||  ||||||||  | ||    
T  4656532 tttttctaccctatgagcttctcgcacattctatgcagtttggattatagaatccgaacgacataaata-catcataaaaacctttaaaaacacattaaa 4656630  T
Q  199 gcatttcaaattttaaaatc 218  Q
     ||||||| ||| |||||||    
T  4656631 acatttcagattctaaaatc 4656650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 40899721 - 40899656
Alignment:
Q  160 cataaacacccccataaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaatagg 226  Q
    |||||||||||| |||||||||| |||||||||| | ||  |||||| ||||||||||| |||||||    
T  40899721 cataaacacccc-ataaaaaccttcaaaaacacgttaaaatatttcagattttaaaatctgaatagg 40899656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 9045712 - 9045764
Alignment:
Q  176 aaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaataggac 228  Q
    |||||||||||||||||| ||||  |||||| ||||| ||||| |||||||||    
T  9045712 aaaacctccaaaaacacgttgaaatatttcagatttttaaatctgaataggac 9045764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 127 - 260
Target Start/End: Original strand, 35356354 - 35356484
Alignment:
Q  127 ccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaatagg 226  Q
    ||||||||||||||||||||| |||| ||| ||| ||||   |||||||||||||||||||| |||| | || ||||||  |||||| ||| | ||||||    
T  35356354 ccctatgcagttcggattatataatccgaacgacgtaaaa--ccccataaaaacctccaaaa-cacgttaaaacatttcggattttagaattcaaatagg 35356450  T
Q  227 acacacgagaaactcatagaatgagtaaagtaac 260  Q
    || ||||||||||||| || ||||| ||||||||    
T  35356451 acgcacgagaaactcaaaggatgagaaaagtaac 35356484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 246
Target Start/End: Original strand, 3255083 - 3255228
Alignment:
Q  100 ttttccaccctatgagcttcttgtgcaccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaag 199  Q
    |||| ||||||||||| |||| |||  | ||||||||||||||||||| |||| ||| | |||||||| |||||||||||||| |||||| |   ||||     
T  3255083 tttttcaccctatgagtttctcgtgtgctctatgcagttcggattatataatcagaacggcataaaca-ccccataaaaaccttcaaaaatatattgaaa 3255181  T
Q  200 catttcaaattttaaaatccgaataggacacacgagaaactcataga 246  Q
     |||| | |||||| |||||||||||  | | |||||||||||||||    
T  3255182 tattttagattttagaatccgaatagagcgcgcgagaaactcataga 3255228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 22713417 - 22713518
Alignment:
Q  141 gattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaataggacacacgagaaact 240  Q
    ||||||| |||| ||||| |||||||||||   |||||||||||||||||||| ||||  |||||| |||||||||| | |||||| | |||||||||||    
T  22713417 gattataaaatccgaatggcataaacaccctg-taaaaacctccaaaaacacgttgaaatatttcagattttaaaattcaaatagg-cgcacgagaaact 22713514  T
Q  241 cata 244  Q
    ||||    
T  22713515 cata 22713518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 40172484 - 40172546
Alignment:
Q  128 cctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaaca 191  Q
    |||||||| ||||||||||||||| ||||  ||||||||| ||| |||||||||||||||||||    
T  40172484 cctatgcaattcggattatagaatttgaacaacataaaca-cccaataaaaacctccaaaaaca 40172546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 48392436 - 48392394
Alignment:
Q  208 attttaaaatccgaataggacacacgagaaactcatagaatga 250  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  48392436 attttaaaatccaaatatgacacacgagaaactcatagaatga 48392394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 225
Target Start/End: Complemental strand, 17116011 - 17115915
Alignment:
Q  128 cctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaatag 225  Q
    |||| |||||| | ||||||||||  ||| |||||||||||||| |||||||| | |||||||||| ||||  |||| | |||||||||||| |||||    
T  17116011 cctacgcagtttgtattatagaattcgaacgacataaacacccc-ataaaaactttcaaaaacacgttgaaatattttagattttaaaatccaaatag 17115915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 44453679 - 44453610
Alignment:
Q  176 aaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaataggacacacgagaaactcatag 245  Q
    ||||| |||||||||||| ||||  ||||| ||||||| ||||||||||||||  |||||||||| ||||    
T  44453679 aaaacttccaaaaacacgttgaaatatttcgaattttagaatccgaataggacgtacgagaaacttatag 44453610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 245
Target Start/End: Original strand, 35424866 - 35424981
Alignment:
Q  128 cctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaatagga 227  Q
    |||||| |||| ||||||||||||||||| | ||||||||  | ||||||||||||| |||| | | | ||  |||||| |||||| ||| ||| ||||     
T  35424866 cctatgtagtttggattatagaatctgaacggcataaaca-tcgcataaaaacctcc-aaaatatgttaaaatatttcagattttagaattcgattaggg 35424963  T
Q  228 cacacgagaaactcatag 245  Q
    | ||||||||||||||||    
T  35424964 cgcacgagaaactcatag 35424981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 40256889 - 40256820
Alignment:
Q  176 aaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaataggacacacgagaaactcatag 245  Q
    |||||||||||||||||| || |  |||||| ||||||||||||||||| | | | ||| ||||||||||    
T  40256889 aaaacctccaaaaacacgttgcaatatttcagattttaaaatccgaataaggcgcgcgaaaaactcatag 40256820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 36645842 - 36645882
Alignment:
Q  128 cctatgcagttcggattatagaatctgaatgacataaacac 168  Q
    ||||||||||||  ||||||||||| |||||||||||||||    
T  36645842 cctatgcagttcaaattatagaatccgaatgacataaacac 36645882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 99 - 245
Target Start/End: Original strand, 13019603 - 13019748
Alignment:
Q  99 tttttccaccctatgagcttcttgtgcaccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaa 198  Q
    |||| |||| |||||| |||||  |||  ||||||||||| ||||||||||||| ||| | ||||||||| || ||||||| || ||||| |||  ||||    
T  13019603 ttttcccactctatgaacttctcatgcgtcctatgcagtttggattatagaatccgaacggcataaacactcc-ataaaaatcttcaaaatcacattgaa 13019701  T
Q  199 gcatttcaaattttaaaatccgaataggacacacgagaaactcatag 245  Q
     | ||||| ||||| ||||||||| ||||||| ||||||||||||||    
T  13019702 acgtttcagattttcaaatccgaaaaggacacgcgagaaactcatag 13019748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 43050241 - 43050146
Alignment:
Q  127 ccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaata 224  Q
    ||||||||||||||||||||||||||  || |||||||| | |||  ||||||||||| |||||||| |||| ||||||| |||||||||||||||||    
T  43050241 ccctatgcagttcggattatagaatccaaacgacataaata-ccctgtaaaaacctcc-aaaacacgttgaaacatttcagattttaaaatccgaata 43050146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 216
Target Start/End: Original strand, 38308061 - 38308146
Alignment:
Q  130 tatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcatttcaaattttaaaa 216  Q
    ||||||||| | ||||||||||| ||| | |||||||| ||| |||||||| | |||||||||| |||| ||||||| |||||||||    
T  38308061 tatgcagtttgaattatagaatccgaacggcataaaca-ccctataaaaactttcaaaaacacgttgaaacatttcagattttaaaa 38308146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 24511023 - 24510926
Alignment:
Q  127 ccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaatagg 226  Q
    |||||||||||||| ||||||||||   || | |||||||| ||| ||||||||||||||||  ||| | ||  |||||| |||||||||||||||||||    
T  24511023 ccctatgcagttcgaattatagaattcaaacggcataaacatccc-ataaaaacctccaaaat-acgtttaaatatttcagattttaaaatccgaatagg 24510926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 13378425 - 13378477
Alignment:
Q  175 aaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaatagga 227  Q
    ||||||||||||||||||  ||||  |||||| |||||| |||||||||||||    
T  13378425 aaaaacctccaaaaacacattgaaatatttcagattttataatccgaatagga 13378477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 244
Target Start/End: Original strand, 31596513 - 31596628
Alignment:
Q  128 cctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaatagga 227  Q
    ||||| |||||  |||| |||||| |||| | |||||||||||  |||||| |||||||||||||| |||| ||||||| |||||||||| ||||||||     
T  31596513 cctatacagtttagattgtagaatttgaacggcataaacaccca-ataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaataggg 31596611  T
Q  228 cacacgagaaactcata 244  Q
    | ||| |||||||||||    
T  31596612 cgcacaagaaactcata 31596628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 9929423 - 9929325
Alignment:
Q  127 ccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaatagg 226  Q
    |||||||||||||||||||||||||  ||| | |||||||| || ||||||||||||| |||||||| ||||  |||||| |||||||||||  ||||||    
T  9929423 ccctatgcagttcggattatagaattcgaacgtcataaaca-cctcataaaaacctcc-aaaacacgttgaaagatttcagattttaaaatctaaatagg 9929326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 226
Target Start/End: Original strand, 29389116 - 29389242
Alignment:
Q  99 tttttccaccctatgagcttcttgtgcaccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaa 198  Q
    |||| |||||||||||| |||| |  |  ||||| |||||||||||||| |||| |||   |||||||||||  |||||||||| |||||||||| ||||    
T  29389116 ttttcccaccctatgagtttctcgcacgtcctatacagttcggattataaaatccgaacagcataaacaccca-ataaaaaccttcaaaaacacgttgaa 29389214  T
Q  199 gcatttcaaattttaaaatccgaatagg 226  Q
     ||||||  ||||||||||| |||||||    
T  29389215 acatttcggattttaaaatctgaatagg 29389242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 245
Target Start/End: Complemental strand, 33450962 - 33450816
Alignment:
Q  99 tttttccaccctatgagcttcttgtgcaccctatgcagttcggattataga-atctgaatgacataaacacccccataaaaacctccaaaaacacgctga 197  Q
    |||||| ||| |||||| |||||| ||| | ||| ||||||||| |||||  ||| |||  ||||||||||| || ||||| |||||||||||||| |||    
T  33450962 tttttctaccttatgagtttcttgcgcatcttatacagttcggagtataggtatccgaacaacataaacacctcc-taaaagcctccaaaaacacgttga 33450864  T
Q  198 agcatttcaaattttaaaatccgaataggacacacgagaaactcatag 245  Q
    |  ||||| ||||||| |||||||||||||| | | |||| |||||||    
T  33450863 aatatttcgaattttagaatccgaataggacgcgcaagaagctcatag 33450816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 30525782 - 30525881
Alignment:
Q  105 caccctatgagcttcttgtgcaccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcattt 204  Q
    ||||||||||| |||| |  | ||||||||| || ||||||||||||| ||| | |||||||| | | ||||||||||||||||||||| |||| |||||    
T  30525782 caccctatgagtttctcgcacgccctatgcaatttggattatagaatccgaacggcataaacatctc-ataaaaacctccaaaaacacgttgaaacattt 30525880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 226
Target Start/End: Complemental strand, 989635 - 989518
Alignment:
Q  107 ccctatgagcttcttgtgcaccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcatttca 206  Q
    ||||| ||||||||  ||||||||||| |||||||||| ||||||| |||   |||||| |||||||| |||| ||||||||||||| ||||  ||||||    
T  989635 ccctacgagcttctcatgcaccctatgtagttcggattttagaatccgaactgcataaa-acccccat-aaaatctccaaaaacacgttgaaatatttca 989538  T
Q  207 aattttaaaatccgaatagg 226  Q
     |||||| | || |||||||    
T  989537 gattttagattctgaatagg 989518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 248
Target Start/End: Original strand, 29263808 - 29263914
Alignment:
Q  141 gattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaataggacacacgagaaact 240  Q
    |||||||||||||||| |||||||||| ||| ||||||| || |||||||||  |||| |||||   ||||||||||| ||||| |||   |||||||||    
T  29263808 gattatagaatctgaacgacataaaca-cccaataaaaatcttcaaaaacacattgaaacattttcgattttaaaatctgaataagacgtgcgagaaact 29263906  T
Q  241 catagaat 248  Q
    | ||||||    
T  29263907 cgtagaat 29263914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 245
Target Start/End: Original strand, 18075514 - 18075622
Alignment:
Q  135 agttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaataggacacacga 234  Q
    |||||||||||||||||||||| || ||||||||||| ||||||||| ||||||  ||| | ||  |||||| |||||| |||  ||||||| | || ||    
T  18075514 agttcggattatagaatctgaacgaaataaacacccc-ataaaaaccaccaaaag-acgttaaaatatttcagattttataatttgaatagggcgcatga 18075611  T
Q  235 gaaactcatag 245  Q
    |||||||||||    
T  18075612 gaaactcatag 18075622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 6542050 - 6542087
Alignment:
Q  207 aattttaaaatccgaataggacacacgagaaactcata 244  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  6542050 aattttagaatctgaataggacacacgagaaactcata 6542087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 32826713 - 32826786
Alignment:
Q  176 aaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaataggacacacgagaaactcatagaatg 249  Q
    ||||||||||||||| || ||||  |||| |||||||| ||| | ||||| || | ||||||||||||||||||    
T  32826713 aaaacctccaaaaactcgttgaaatatttaaaattttagaattcaaatagaacgcgcgagaaactcatagaatg 32826786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 33148311 - 33148360
Alignment:
Q  175 aaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaata 224  Q
    ||||||||||||||||||| ||||  ||||||| ||||| ||||||||||    
T  33148311 aaaaacctccaaaaacacgttgaaatatttcaatttttagaatccgaata 33148360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 33240879 - 33240953
Alignment:
Q  169 ccccataaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaataggacacacgagaaactcatag 245  Q
    |||||||||||||| |||||||  | ||||  |||||  |||||| |||||||||||| | ||||||||||||||||    
T  33240879 ccccataaaaaccttcaaaaac--gttgaaatatttcggattttagaatccgaatagggcgcacgagaaactcatag 33240953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 6355775 - 6355811
Alignment:
Q  208 attttaaaatccgaataggacacacgagaaactcata 244  Q
    |||||||||| | ||||||||||||||||||||||||    
T  6355775 attttaaaattcaaataggacacacgagaaactcata 6355811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 99 - 244
Target Start/End: Complemental strand, 1750224 - 1750080
Alignment:
Q  99 tttttccaccctatgagcttcttgtgcaccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaa 198  Q
    ||||||||||||||||| |||  |  | | |||| | ||| ||||||||||||| ||| || ||||||||||  ||| |||||||| ||| |||| ||||    
T  1750224 tttttccaccctatgagtttcccgcacgctctatactgtttggattatagaatccgaacgaaataaacaccct-atacaaacctcctaaatcacgttgaa 1750126  T
Q  199 gcatttcaaattttaaaatccgaataggacacacgagaaactcata 244  Q
     ||||| | |||||| ||||| |||||||| |||||||||||||||    
T  1750125 acattttagattttagaatccaaataggacgcacgagaaactcata 1750080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 227
Target Start/End: Complemental strand, 31219324 - 31219199
Alignment:
Q  99 tttttccaccctatgagcttcttgtgcaccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaa 198  Q
    |||| ||||||||||| ||||||| |   |||||||||||| |||||||||||| ||| | |||||||  |||||| ||||||||| |||||| ||||||    
T  31219324 ttttcccaccctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaac-tccccat-aaaacctcc-aaaacatgctgaa 31219228  T
Q  199 gcatttcaaattttaaaatccgaatagga 227  Q
     ||||||| ||||||||||  ||||||||    
T  31219227 acatttcagattttaaaatttgaatagga 31219199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 246
Target Start/End: Complemental strand, 22318314 - 22318197
Alignment:
Q  127 ccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaatagg 226  Q
    |||||||||||||||||||||||||  ||||  |||||||| | | |||||||||| ||||| || | | || ||||||| |||||||||| ||| | ||    
T  22318314 ccctatgcagttcggattatagaattcgaatagcataaacatctc-ataaaaaccttcaaaa-catgttaaaacatttcatattttaaaattcgagttgg 22318217  T
Q  227 acacacgagaaactcataga 246  Q
    |||||||||||||| |||||    
T  22318216 acacacgagaaactaataga 22318197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 53852034 - 53852130
Alignment:
Q  90 gaccgcatgtttttccaccctatgagcttcttgtgcaccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaa 188  Q
    |||||| | |||| ||||| |||||| ||||||  | ||||||| ||||||||||||||||| |||||| |||||| |  |||||||||||||||||||    
T  53852034 gaccgcttcttttcccaccgtatgagtttcttgctcgccctatgtagttcggattatagaatttgaatggcataaata--cccataaaaacctccaaaa 53852130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 245
Target Start/End: Original strand, 26665430 - 26665575
Alignment:
Q  99 tttttccaccctatgagcttcttgtgcaccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaa 198  Q
    |||| ||||| |||||| |||| | || |||||||||||| | ||||||||||| ||| | |||||||| ||| |||||||  ||  |||||| | ||||    
T  26665430 ttttcccaccatatgagtttctcgcgcgccctatgcagtttgaattatagaatccgaacggcataaacaaccc-ataaaaatttcggaaaacatgttgaa 26665528  T
Q  199 gcatttcaaattttaaaatccgaataggacacacgagaaactcatag 245  Q
      |||||  |||||||||||| |||||||| | ||||||||||||||    
T  26665529 atatttcggattttaaaatccaaataggacgcgcgagaaactcatag 26665575  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 42110948 - 42111013
Alignment:
Q  127 ccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacg 193  Q
    |||||||||| | ||||||||||||  ||| |||||||||| |||||||||||||||||||||||||    
T  42110948 ccctatgcaggttggattatagaattcgaacgacataaaca-ccccataaaaacctccaaaaacacg 42111013  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 15462179 - 15462091
Alignment:
Q  99 tttttccaccctatgagcttcttgtgcaccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaa 188  Q
    |||||||| |||||||| |||| | || || ||||||||||| |||||||||||  || | |||||||| ||||||||||||||| ||||    
T  15462179 tttttccaacctatgagtttctcgcgctccttatgcagttcgaattatagaatccaaacggcataaaca-ccccataaaaacctctaaaa 15462091  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 42088068 - 42088016
Alignment:
Q  208 attttaaaatccgaataggacacacgagaaactcatagaatgagtaaagtaac 260  Q
    ||||||||||| ||||||||| ||||| ||||||||||| |||| ||||||||    
T  42088068 attttaaaatcagaataggacgcacgaaaaactcatagagtgagaaaagtaac 42088016  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 259
Target Start/End: Complemental strand, 51715106 - 51715009
Alignment:
Q  160 cataaacacccccataaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaataggacacacgagaaactcatagaatgagtaaagtaa 259  Q
    |||||||||||| |||||||||||| |||||||| | || ||||||| |||||| ||||||||| || | | |||||||||| ||  ||||| |||||||    
T  51715106 cataaacacccc-ataaaaacctcc-aaaacacgttaaaacatttcagattttagaatccgaatcgggcgcgcgagaaactcgtatgatgagaaaagtaa 51715009  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 20705014 - 20704961
Alignment:
Q  172 cataaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaatag 225  Q
    |||||||||||||||||| | | | || ||||||||||||||||||| ||||||    
T  20705014 cataaaaacctccaaaaatatgttaaaacatttcaaattttaaaatctgaatag 20704961  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 33513486 - 33513453
Alignment:
Q  99 tttttccaccctatgagcttcttgtgcaccctat 132  Q
    ||||||||||||||||| ||||||||||||||||    
T  33513486 tttttccaccctatgagtttcttgtgcaccctat 33513453  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 30670897 - 30670961
Alignment:
Q  200 catttcaaattttaaaatccgaataggacacacgagaaactcatagaatgagtaaagtaacagtc 264  Q
    ||||||| |||||| |||||||||| ||  | |||||||||||||| ||||| ||||||| ||||    
T  30670897 catttcagattttagaatccgaataagatgcgcgagaaactcatagtatgagaaaagtaatagtc 30670961  T

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Target: scaffold0110 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 6532 - 6459
Alignment:
Q  130 tatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcattt 204  Q
    ||||||||||||||||||||||| ||| ||||||||| ||| |||||||||||| ||||| ||| |||| |||||    
T  6532 tatgcagttcggattatagaatccgaacgacataaac-ccctcataaaaacctctaaaaatacgttgaaacattt 6459  T

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Target: scaffold0071 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 13 - 101
Alignment:
Q  99 tttttccaccctatgagcttcttgtgcaccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaa 188  Q
    |||||||| |||||||| |||| | || || ||||||||||| |||||||||||  || | |||||||| ||||||||||||||| ||||    
T  13 tttttccaacctatgagtttctcgcgctccttatgcagttcgaattatagaatccaaacggcataaaca-ccccataaaaacctctaaaa 101  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 53689121 - 53689037
Alignment:
Q  140 ggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaatag 225  Q
    ||||||||||||||||| |||||||||| |||||||||||  | |||||| ||| |||| ||||| ||| |||| | |||||||||    
T  53689121 ggattatagaatctgaacgacataaaca-ccccataaaaaatttcaaaaatacgttgaaacattttaaaatttagattccgaatag 53689037  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 38303337 - 38303261
Alignment:
Q  173 ataaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaataggacacacgagaaactcatagaatg 249  Q
    |||||||||||||||||| |  |||| ||||||| ||||||| ||||||||||    | ||||||||||||||||||    
T  38303337 ataaaaacctccaaaaacgcattgaaacatttcagattttaagatccgaatagagtgcgcgagaaactcatagaatg 38303261  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 41945199 - 41945255
Alignment:
Q  130 tatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaa 188  Q
    |||||||||||||||||| |||| ||| ||||||||||  ||||||||||||| |||||    
T  41945199 tatgcagttcggattatataatccgaacgacataaaca--cccataaaaaccttcaaaa 41945255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 259
Target Start/End: Complemental strand, 33086976 - 33086858
Alignment:
Q  136 gttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaaacacgctgaagcatttcaaattttaaaatccgaataggacacacgag 235  Q
    |||||||||||| |||  |||||||| ||||||||| ||||||  ||| |||| |||| | || |||||| |||||||||||||||||| |   | ||||    
T  33086976 gttcggattatataattcgaatgacaaaaacacccc-ataaaaggctctaaaa-cacgttaaaacatttcgaattttaaaatccgaatatg---cgcgag 33086882  T
Q  236 aaactcatagaatgagtaaagtaa 259  Q
    |||||||||| | ||| |||||||    
T  33086881 aaactcataggaggagaaaagtaa 33086858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 7257525 - 7257612
Alignment:
Q  100 ttttccaccctatgagcttcttgtgcaccctatgcagttcggattatagaatctgaatgacataaacacccccataaaaacctccaaaa 188  Q
    ||||||||| |||||| ||||  ||| | ||||| ||||||||||||||||||  || ||||| || |||||||  |||||||||||||    
T  7257525 ttttccaccttatgagtttctcatgcgctctatgtagttcggattatagaatccaaacgacat-aatacccccaataaaacctccaaaa 7257612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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