View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1905_high_3 (Length: 387)
Name: NF1905_high_3
Description: NF1905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1905_high_3 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 387
Target Start/End: Complemental strand, 32845425 - 32845057
Alignment:
| Q |
19 |
gttcaggcaatctcaatgtatatttctcatgatctttttcttcacctctaatagttactatagaatgtcccgttgaatgtgaccttgaaaatctatgatc |
118 |
Q |
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| T |
32845425 |
gttcaggcaatctcaatgtatatttctcatgatctttttcttcacctctaatagttactatagaatgtcccgttgaatgtgaccttgaaaatctatgatc |
32845326 |
T |
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| Q |
119 |
ttcttgttgttgcatactcatacgcacatgatgatcatgttgatcaccttcatgtacttgagctctagtgatttcaccaacattgtcactttcctctcct |
218 |
Q |
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| T |
32845325 |
ttcttgttgttgcatactcatacccacatgatgatcatgttgatcaccttcatgtacttgagctctagtgatttcaccaacattgtcactttcctctcct |
32845226 |
T |
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| Q |
219 |
ctaacatcaatgtgtatgtcaccgcatggtaacgatgtcataccctcttgtgcattaaggttgttattgttgttgttgtggttgccttccccgtgtttgg |
318 |
Q |
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| T |
32845225 |
ctaacatcaatgtgtatatcatcgcatggtaacgatgtcataccctcttgcacattaaggttgttattgttgttgttgtggttgccttccccgtgtttgg |
32845126 |
T |
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| Q |
319 |
acatttggttgggaggtgaatcaaggtttgttcgacaaacggggcatgtcttatgagattcaagccata |
387 |
Q |
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| T |
32845125 |
acatttggttgggaggtgaatcaaggtctgttcgacaaacggggcatgtcttatgagattcaagccata |
32845057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 387
Target Start/End: Complemental strand, 27745742 - 27745377
Alignment:
| Q |
19 |
gttcaggcaatctcaatgtatatttctcatgatctttttcttcacctctaatagttactatagaatgtcccgttgaatgtgaccttgaaaatctatgatc |
118 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| |||| || |
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| T |
27745742 |
gttcaggcaatctcaatgtatatttttcatcatctttttcttcacctctaatcattactatagaatgtcctgttgaatgtgatcttgaaaatatatgttc |
27745643 |
T |
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| Q |
119 |
ttcttgttgttgcatactcatacgcacatgatgatcatgttgatcaccttcatgtacttgagctctagtgatttcaccaacattgtcactttcctctcct |
218 |
Q |
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||||||||| ||| || | | |||||||| ||||||||||||||||||||||| ||||||||||||||| |||| | |||| |||||||||||||| |
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| T |
27745642 |
ttcttgttg---catgatctttctcacatgatcatcatgttgatcaccttcatgtatttgagctctagtgatctcactagtattgacactttcctctcct |
27745546 |
T |
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| Q |
219 |
ctaacatcaatgtgtatgtcaccgcatggtaacgatgtcataccctcttgtgcattaaggttgttattgttgttgttgtggttgccttccccgtgtttgg |
318 |
Q |
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| T |
27745545 |
ctaacatcaatgcgtgtatcattgcacggtaatgaggtcataccctcttgtgcattaacgttgttgttggtgttgttgttgcaacattccccgtgttttg |
27745446 |
T |
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| Q |
319 |
acatttggttgggaggtgaatcaaggtttgttcgacaaacggggcatgtcttatgagattcaagccata |
387 |
Q |
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| T |
27745445 |
acgtttggttgggaggtacatcaagatcggttcgacaaacaggacatgtcttgtgattttcaaaccata |
27745377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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