View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1905_high_9 (Length: 321)
Name: NF1905_high_9
Description: NF1905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1905_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 306
Target Start/End: Original strand, 4082378 - 4082676
Alignment:
| Q |
11 |
cagagaggcaaagagagtgaagaaaagaaaggtcacgtgaatgactgcaacagctgatatcacagtgtgtttaacacttgt---ctcgttcaggtatcgc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4082378 |
cagagaggcaaagagagtgaagaaaagaaaggtcacgtgaatgactgcaacaactgatatcacagtgtgtttaacacttgtgtgctcgttcaggtatcgc |
4082477 |
T |
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| Q |
108 |
aaaacatctttgtcaagttgagaacagagtagagcaccaaatgccataacaactctcacacagatagattcaaagatctgaaaacactccctcatctcaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4082478 |
aaaacatctttgtcaagttgagaacagagtagagcaccaaatgccataacaactctcacacagatagattcaaagatctgaaaacgctccctcatctcaa |
4082577 |
T |
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| Q |
208 |
catgagggtcttcaagagtctggacaacagccattgaaatttgaaagtttcttccggctccggcttccgttggtttgtgtttgtgtttgtgttctctgt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4082578 |
catgagggtcttcaagagtctggacaacagccattgaaatttgaaagtttcttccgactccggcttccattggtttgtgtttgtgtttgtgttctctgt |
4082676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 294
Target Start/End: Original strand, 4092087 - 4092373
Alignment:
| Q |
11 |
cagagaggcaaagagagtgaagaaaagaaaggtcacgtgaatgactgcaacagctgatatcacagtgtgtttaacacttgt---ctcgttcaggtatcgc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | || ||||||||||||| |
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| T |
4092087 |
cagagaggcaaagagagtgaagaaaagaaaggtcacgtgaatgactgcaacagctgatatcacagtttgtttaacacttatgtgctagttcaggtatcgc |
4092186 |
T |
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| Q |
108 |
aaaacatctttgtcaagttgagaacagagtagagcaccaaatgccataacaactctcacacagatagattcaaagatctgaaaacactccctcatctcaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
4092187 |
aaaacatctttgtcaagttgagaacagagtagagcaccaaatgccataacaactctcacacagatagattcaaagatcttaaaacgctccctcatctcaa |
4092286 |
T |
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| Q |
208 |
catgagggtcttcaagagtctggacaacagccattgaaatttgaaagtttcttccggctccggcttccgttggtttgtgtttgtgtt |
294 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4092287 |
catgagggtcttcaagagtctggacaacatccattgaaatttgaaagtttcttccggctccggcttccattggtttgtgtttgtgtt |
4092373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 4086527 - 4086605
Alignment:
| Q |
11 |
cagagaggcaaagagagtgaagaaaagaaaggtcacgtgaatgactgcaacagctgatatcacagtgtgtttaacactt |
89 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4086527 |
cagagaggcaaagagagtgaagaaaagaaaggtcacgtgaatgactgcaacaactgatatcacagtgtgtttaacactt |
4086605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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